puzzle picture
592: CASP10 Target T0730
Status: Closed

Summary

Name: 592: CASP10 Target T0730
Status: Closed
Created: 07/05/2012
Points: 100
Expired: 07/14/2012 - 16:00
Difficulty: Advanced
Description: The thirteenth CASP10 target is another big one: 167 residues. We are providing you with 5 different templates, but two of them are the same protein with different alignments. We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.
Categories: CASP10, Overall, Prediction

Top Groups

RankGroupScorePoints
1Anthropic Dreams11,869100
2L'Alliance Francophone11,86479
3Contenders11,76862
4foldeRNA11,63948
5Void Crushers11,61637

Top Evolvers

Top Soloists



Need this puzzle? Log in to download.  

Comments

beta_helix's picture
User offline. Last seen 16 min 46 sec ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=150
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 7, 13 & 18 are highly predicted to be in a helix. However, the Leucines at residues 46, 129, 134 & 149 are predicted to be in a sheet.
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1nep
http://www.pdb.org/pdb/explore/explore.do?structureId=3pdd
http://www.pdb.org/pdb/explore/explore.do?structureId=3qc5
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b

Get Started: Download
  Windows    OSX    Linux  
Windows
(7/8/10)
OSX
(10.7 or later)
Linux
(64-bit)

Are you new to Foldit? Click here.

Are you a student? Click here.

Are you an educator? Click here.
Search
Only search fold.it
Recommend Foldit
User login
Soloists
Evolvers
Groups
Topics
Top New Users
Sitemap

Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons