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590: CASP10 Target T0728
Status: Closed

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RankPlayerGroupScorePoints
226AngelPan 46 1458  4,9221
227Flykiller 46 1458  4,9221
228geickelb 46 1458  4,9221
229FlorianKast 46 1458  4,9221
230rburmester 46 1458  4,9221
231blafoot 46 1458  4,9221


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beta_helix's picture
User offline. Last seen 6 days 9 hours ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=148
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 8, & 17 are highly predicted to be in a helix. However, the Leucine at residue 60 is predicted to be in a sheet.
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Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3d33
http://www.pdb.org/pdb/explore/explore.do?structureId=2eig
http://www.pdb.org/pdb/explore/explore.do?structureId=3jqw
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b

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