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590: CASP10 Target T0728
Status: Closed
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Soloists
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| 176 | steamywindow 46 1458 | | 8,373 | 1 | | 177 | lacie 46 1458 | | 8,332 | 1 | | 178 | glaciall 46 1458 | Anthropic Dreams | 8,298 | 1 | | 179 | screenshot 46 1458 | | 8,277 | 1 | | 180 | ten_string 46 1458 | | 8,041 | 1 | | 181 | GregNovi 46 1458 | | 8,034 | 1 | | 182 | Mr.orange 46 1458 | | 7,989 | 1 | | 183 | kurowasan 46 1458 | | 7,668 | 1 | | 184 | Cerzax 46 1458 | | 7,655 | 1 | | 185 | ballisticX 46 1458 | | 7,653 | 1 | | 186 | nmos1056 46 1458 | | 7,622 | 1 | | 187 | dbuske 46 1458 | Geekdo | 7,570 | 1 | | 188 | NyteShade 46 1458 | Void Crushers | 7,545 | 1 | | 189 | crawlee34225 46 1458 | | 7,523 | 1 | | 190 | voodooattack 46 1458 | | 7,518 | 1 | | 191 | RandyFithian 46 1458 | | 7,518 | 1 | | 192 | Ashrac 46 1458 | | 7,517 | 1 | | 193 | joschi 46 1458 | | 7,517 | 1 | | 194 | jkhbaksa 46 1458 | | 7,517 | 1 | | 195 | Bearpaw 46 1458 | Team Canada | 7,517 | 1 | | 196 | PhotonCatcher369 46 1458 | | 7,517 | 1 | | 197 | Artiem 46 1458 | | 7,517 | 1 | | 198 | connectonaut 46 1458 | | 7,517 | 1 | | 199 | FTC 46 1458 | | 7,515 | 1 | | 200 | nickbobbitt2015 46 1458 | | 7,515 | 1 | Need this puzzle? Log in to download.
Comments
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Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=148
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Leucines at residues 8, & 17 are highly predicted to be in a helix. However, the Leucine at residue 60 is predicted to be in a sheet.
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Link to template PDBs:
http://www.pdb.org/pdb/explore/explore.do?structureId=3d33
http://www.pdb.org/pdb/explore/explore.do?structureId=2eig
http://www.pdb.org/pdb/explore/explore.do?structureId=3jqw
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b