puzzle picture
590: CASP10 Target T0728
Status: Closed

Soloists

RankPlayerGroupScorePoints
176steamywindow 46 1458  8,3731
177lacie 46 1458  8,3321
178glaciall 46 1458 Anthropic Dreams8,2981
179screenshot 46 1458  8,2771
180ten_string 46 1458  8,0411
181GregNovi 46 1458  8,0341
182Mr.orange 46 1458  7,9891
183kurowasan 46 1458  7,6681
184Cerzax 46 1458  7,6551
185ballisticX 46 1458  7,6531
186nmos1056 46 1458  7,6221
187dbuske 46 1458 Geekdo7,5701
188NyteShade 46 1458 Void Crushers7,5451
189crawlee34225 46 1458  7,5231
190voodooattack 46 1458  7,5181
191RandyFithian 46 1458  7,5181
192Ashrac 46 1458  7,5171
193joschi 46 1458  7,5171
194jkhbaksa 46 1458  7,5171
195Bearpaw 46 1458 Team Canada7,5171
196PhotonCatcher369 46 1458  7,5171
197Artiem 46 1458  7,5171
198connectonaut 46 1458  7,5171
199FTC 46 1458  7,5151
200nickbobbitt2015 46 1458  7,5151


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beta_helix's picture
User offline. Last seen 4 days 22 hours ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=148
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 8, & 17 are highly predicted to be in a helix. However, the Leucine at residue 60 is predicted to be in a sheet.
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3d33
http://www.pdb.org/pdb/explore/explore.do?structureId=2eig
http://www.pdb.org/pdb/explore/explore.do?structureId=3jqw
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b

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