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583: Large CASP10 Refinement Puzzle: TR689
Status: Closed

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RankGroupScorePoints
1Anthropic Dreams14,390100
2Void Crushers14,36179
3Beta Folders14,35061
4Contenders14,33347
5Go Science14,33236
6Team Hungary14,28727
7foldeRNA14,26620
8L'Alliance Francophone14,17615
9FoldIt@Netherlands14,11011
10Androids14,0398
11Newton's Cradle13,9906
12Richard Dawkins Foundation13,9494
13Atlanta13,8823
14Russian team13,8662
15SETI.Germany13,7281
16Gargleblasters13,7011
177Monkeys13,6601
18Natural Abilities13,5151
19Extraterrestrials13,5051
20Another Hour Another Point13,4571
21Czech National Team13,1931
22Mojo Risin'13,1601
23Team China13,1421
24Skeptics Guide to the Universe13,1271
25Nerdfighters13,0991


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beta_helix's picture
User offline. Last seen 18 hours 56 min ago. Offline
Joined: 05/09/2008
Groups: None
More info here:

This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=132

Note that the organizers gave us this hint:

"Starting model GDT_TS=87."

GDT_TS=87 essentially means that 87% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test

We believe that Jiang_Fold_TS1.pdb is identical to the refinement model.

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 34, 49, 54, 57, 66, 71 & 183 are highly predicted to be in sheets. However, the Valines at residues 3, 107, 137 & 144 are predicted to be anything.

spmm's picture
User offline. Last seen 4 days 7 hours ago. Offline
Joined: 08/05/2010
Groups: Void Crushers
6-7 minutes to run fuse

Just a note - on an ok machine (i7-720QM) with 8GB RAM, foldit and a browser running it is taking 6-7 minutes to run Blue Fuse.

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