puzzle picture
574: CASP10 Target T0709
Status: Closed

Summary

Name: 574: CASP10 Target T0709
Status: Closed
Created: 06/11/2012
Points: 100
Expired: 06/16/2012 - 13:00
Difficulty: Intermediate
Description: The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.
Categories: CASP10, Overall, Prediction

Top Groups

RankGroupScorePoints
1Go Science8,586100
2Anthropic Dreams8,56177
3foldeRNA8,55359
4Contenders8,53844
5Void Crushers8,51733

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Comments

beta_helix's picture
User offline. Last seen 11 hours 9 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons