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558: CASP10 Target T0668
Status: Closed

Summary

Name: 558: CASP10 Target T0668
Status: Closed
Created: 05/15/2012
Points: 100
Expired: 05/24/2012 - 03:00
Difficulty: Advanced
Description: Just to warn you: this one is going to be tough! None of the alignment programs were able to find good templates for this target, and it might be the case that this protein has no homologs. Therefore we are giving you 6 templates (in hope that one of them is correct) for now, and will provide you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.
Categories: CASP10, Overall, Prediction

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Comments

beta_helix's picture
User offline. Last seen 4 days 1 hour ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (which has the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=65

____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 51 is highly predicted to be in a sheet. However, the Valine at residue 10 is not predicted to be anything.

beta_helix's picture
User offline. Last seen 4 days 1 hour ago. Offline
Joined: 05/09/2008
Groups: None
Link to template PDBs:
Get Started: Download
  Windows    OSX    Linux  
Windows
(7/8/10)
OSX
(10.7 or later)
Linux
(64-bit)

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons