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558: CASP10 Target T0668
Status: Closed


Name: 558: CASP10 Target T0668
Status: Closed
Created: 05/15/2012
Points: 100
Expired: 05/24/2012 - 03:00
Difficulty: Advanced
Description: Just to warn you: this one is going to be tough! None of the alignment programs were able to find good templates for this target, and it might be the case that this protein has no homologs. Therefore we are giving you 6 templates (in hope that one of them is correct) for now, and will provide you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.
Categories: CASP10, Overall, Prediction

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1Anthropic Dreams10,037100
4Void Crushers9,98851
5Go Science9,96840

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beta_helix's picture
User offline. Last seen 5 hours 48 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (which has the amino acid sequence):


Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 51 is highly predicted to be in a sheet. However, the Valine at residue 10 is not predicted to be anything.

beta_helix's picture
User offline. Last seen 5 hours 48 min ago. Offline
Joined: 05/09/2008
Groups: None
Link to template PDBs:
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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons