beta_helix's picture
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Delay with the secondary structure predictions:

The SAM-T08 server had a power failure last Thursday and hasn't recovered yet.
I will post them as soon as SAM-T08 is back up and running.

beta_helix's picture
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until the SAM-T08 server comes back...

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanine at residue 10 is mostly predicted to be part of a helix (an H with a 8 above it). However, the Phenylalanine at residue 55 is predicted to be in a sheet (an E with a 9 above it).

beta_helix's picture
User offline. Last seen 19 hours 53 min ago. Offline
Joined: 05/09/2008
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Here are the secondary structure predictions FINALLY:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 88 is highly predicted to be part of a helix. However, the Valine at residue 32 is predicted to be anything.

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