puzzle picture
551: Pre-CASP blind Alignment Puzzle 3
Status: Closed

Groups

RankGroupScorePoints
1L'Alliance Francophone12,067100
2Anthropic Dreams12,06476
3Go Science12,05258
4Contenders12,02343
5Void Crushers11,98132
6Another Hour Another Point11,86123
7foldeRNA11,81516
8Russian team11,78912
9SETI.Germany11,6218
10Gargleblasters11,4736
11FoldIt@Netherlands11,1114
12Team Hungary11,0903
13Nerdfighters11,0092
14Mojo Risin'10,7171
15Richard Dawkins Foundation10,6781
16xkcd10,3521
17Freedom Folders10,3421
18Androids10,2651
19Wisconsin Pride9,9771
20Newton's Cradle9,9071
21Team China9,1701
22BOINC@Poland9,0571
23Geekdo8,2331
24Team Toombs7,9331
25DSN @ Home7,3851


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Comments

beta_helix's picture
User offline. Last seen 17 hours 54 min ago. Offline
Joined: 05/09/2008
Groups: None
Delay with the secondary structure predictions:

The SAM-T08 server had a power failure last Thursday and hasn't recovered yet.
I will post them as soon as SAM-T08 is back up and running.

beta_helix's picture
User offline. Last seen 17 hours 54 min ago. Offline
Joined: 05/09/2008
Groups: None
until the SAM-T08 server comes back...

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanine at residue 10 is mostly predicted to be part of a helix (an H with a 8 above it). However, the Phenylalanine at residue 55 is predicted to be in a sheet (an E with a 9 above it).

beta_helix's picture
User offline. Last seen 17 hours 54 min ago. Offline
Joined: 05/09/2008
Groups: None
Here are the secondary structure predictions FINALLY:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 88 is highly predicted to be part of a helix. However, the Valine at residue 32 is predicted to be anything.

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