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528: CASP ROLL Target R0014
Status: Closed

Summary

Name: 528: CASP ROLL Target R0014
Status: Closed
Created: 03/11/2012
Points: 130
Expired: 03/23/2012 - 17:00
Difficulty: Intermediate
Description: We are starting you off with server predictions for CASP ROLL target R0014. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. As requested in the Scientist Chat, this puzzle will be up for 11 days. So please work on each server model, not just the one that gets you the most points initially! The secondary structure predictions are posted in the puzzle comments.
Categories: Overall, Prediction

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Comments

beta_helix's picture
User offline. Last seen 11 hours 36 min ago. Offline
Joined: 05/09/2008
Groups: None
Here are the secondary structure predictions:

This puzzle is worth 130 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucine at residue 9 is highly predicted to be part of a sheet. However, the Leucine at residue 23 is predicted to be anything.

bertro's picture
User offline. Last seen 1 day 7 hours ago. Offline
Joined: 05/02/2011
Groups: Beta Folders
Is that 100 or 130 pts?

Is that 100 or 130 pts?

beta_helix's picture
User offline. Last seen 11 hours 36 min ago. Offline
Joined: 05/09/2008
Groups: None
Thanks for catching that!

130 points

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