523: CASP ROLL Target R0010

Summary

Name:

Status:

Closed

Created:

02/29/2012

Points:

130

Expired:

03/10/2012 - 23:59

Difficulty:

Intermediate

Description:

We are starting you off with server predictions for CASP ROLL target R0010. Luckily, this is a shorter target: only 80 residues. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. As requested in the Scientist Chat, this puzzle will be up for 10 days. So please work on each server model, not just the one that gets you the most points initially! The secondary structure predictions are posted in the puzzle comments.

Categories:

Overall, Prediction

Rank

Group

Score

Points

Contenders

10,029

130

Void Crushers

9,999

111

Go Science

9,999

Anthropic Dreams

9,983

L'Alliance Francophone

9,893

Rank

Player

Group

Score

Points

dembones 71 1476

Contenders

10,029

130

Bletchley Park 28 15

Contenders

10,028

128

CharlieFortsCon... 71 1476

Contenders

10,028

127

martinzblavy 71 1476

Contenders

10,028

125

mimi 71 1476

Contenders

10,022

123

Rank

Player

Group

Score

Points

marie_s 71 1476

10,083

130

Bletchley Park 28 15

Contenders

10,028

128

dembones 71 1476

Contenders

10,026

127

mat747 71 1476

Void Crushers

9,999

125

gmn 71 1476

Anthropic Dreams

9,975

123

Wed, 02/29/2012 - 23:25

beta_helix 71 991

Offline

Joined: 05/09/2008

Groups: None

Here are the secondary structure predictions:

This puzzle is worth 130 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 5 & 6 are highly predicted to be part of a sheet. However, the Valine at residue 72 is predicted to be in a helix.