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519: CASP ROLL Target R0009
Status: Closed


Name: 519: CASP ROLL Target R0009
Status: Closed
Created: 02/21/2012
Points: 150
Expired: 03/03/2012 - 15:00
Difficulty: Advanced
Description: The ninth CASP ROLL target, R0009, is unfortunately another big protein and again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.
Categories: Overall, Prediction

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beta_helix's picture
User offline. Last seen 2 weeks 1 day ago. Offline
Joined: 05/09/2008
Groups: None
Here are the secondary structure predictions:

This puzzle is worth 150 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 103 is highly predicted to be part of a sheet. However, the Valine at residue 169 is predicted to be anything.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons