Summary

Name:	517: CASP ROLL Target R0008
Status:	Closed
Created:	02/15/2012
Points:	100
Expired:	02/22/2012 - 21:00
Difficulty:	Intermediate
Description:	CASP ROLL target R0008 is due in 3 weeks so we are starting you off with server predictions. Luckily, these server predictions are very similar to one another. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments.
Categories:	Overall, Prediction

Top Groups

Rank	Group	Score	Points
1	Go Science	10,982	100
2	Anthropic Dreams	10,976	83
3	Void Crushers	10,919	68
4	Contenders	10,896	56
5	L'Alliance Francophone	10,887	45

Rank	Player	Group	Score	Points
1	pauldunn 51 64	Go Science	10,982	100
2	smilingone 113 2760	Go Science	10,979	98
3	HYLEE 113 2760	Go Science	10,978	96
4	meatexplosion 113 649	Anthropic Dreams	10,976	94
5	karstenw 113 2760	Anthropic Dreams	10,976	92

Rank	Player	Group	Score	Points
1	smilingone 113 2760	Go Science	10,973	100
2	gdnskye 113 1420	Anthropic Dreams	10,966	98
3	pauldunn 51 64	Go Science	10,910	96
4	bendbob 113 2760	Anthropic Dreams	10,909	94
5	Bletchley Park 15 25	Contenders	10,891	92

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Thu, 02/16/2012 - 03:08

Offline

Joined: 05/09/2008

Groups: None

Here are the secondary structure predictions:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 118 is predicted to be part of a sheet. However, the Valine at residue 16 is barely predicted to be in a helix.

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