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515: CASP ROLL Target R0007
Status: Closed

Summary

Name: 515: CASP ROLL Target R0007
Status: Closed
Created: 02/14/2012
Points: 100
Expired: 02/23/2012 - 06:00
Difficulty: Advanced
Description: The seventh CASP ROLL target, R0007, is due in less than 3 weeks so again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.
Categories: Overall, Prediction

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Comments

beta_helix's picture
User offline. Last seen 5 hours 30 min ago. Offline
Joined: 05/09/2008
Groups: None
Here are the secondary structure predictions:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 91 is predicted to be part of a helix. However, the Valines at residues 46 & 154 are predicted to be anything.

spmm's picture
User offline. Last seen 40 weeks 3 days ago. Offline
Joined: 08/05/2010
Groups: Void Crushers
SAM image has gone

The image has gone from the post

beta_helix's picture
User offline. Last seen 5 hours 30 min ago. Offline
Joined: 05/09/2008
Groups: None
weird, don't know where it went, here it is again:

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons