Unexpectedly crashed

Case number:845829-991617
Topic:Crash/Hang
Opened by:trpv1
Status:Open
Type:Bug
Opened on:Sunday, January 22, 2012 - 23:24
Last modified:Thursday, February 2, 2012 - 02:02

I was solving the tutorials on Linux Mint 12 64-bit OS, 4GB RAM, Corei3 laptop when the following happened:

~/Foldit$ ./Foldit
Foldit Error: The game has previously not started up correctly.
If this problem persists, please install the latest version.
malloc.c:3683: __libc_malloc: Assertion `!victim || ((((mchunkptr)((char*)(victim) - 2*(sizeof(size_t)))))->size & 0x2) || ar_ptr == (((((mchunkptr)((char*)(victim) - 2*(sizeof(size_t)))))->size & 0x4) ? ((heap_info *)((unsigned long)(((mchunkptr)((char*)(victim) - 2*(sizeof(size_t))))) & ~((2 * (512 * 1024))-1)))->ar_ptr : &main_arena)' failed.
Aborted

(Sun, 01/22/2012 - 23:24  |  9 comments)


Joined: 06/17/2010

Please attach last 20-50 lines of log.txt file

beta_helix's picture
User offline. Last seen 8 hours 6 min ago. Offline
Joined: 05/09/2008
Groups: None

log.txt can be found in here:

Q: Where can I find the Foldit data files?
A: The data files are in different places depending on your OS:

on Windows:
if you installed after 8/23/2011, they will be in your installation directory (the default is C:\Program Files\Foldit\ or C:\Program Files (x86)\Foldit\)
if you installed prior to 8/23/2011:
on Windows XP at C:\Documents and Settings\All Users\Application Data\Foldit\
on Windows 7 and Vista at C:\ProgramData\Foldit\
on a Mac, Ctrl-click on the app and choose "Show Package Contents, then go to Contents/Resources
on Linux, is is the Foldit directory

trpv1's picture
User offline. Last seen 7 years 34 weeks ago. Offline
Joined: 08/15/2011
Groups: None

Well, I think it's outdated a bit...

args passed:
'/home/excognac/Foldit/Foldit'
'-dynamic'
core.init: Mini-Rosetta version 46731 from https://svn.rosettacommons.org/source/branches/mini-interactive-main/rosetta_source
core.init: command: /home/excognac/Foldit/Foldit -database cmp-database-dfe54b7a9f1f2afed6da169a1ec068c1/rosetta_database -resources cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources -interactive_game novice -boinc_url https://fold.it/
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=803431268 seed_offset=0 real_seed=803431268
core.init.random: RandomGenerator:init: Normal mode, seed=803431268 RG_type=mt19937
Can't open audio device.
starting the init thread!..
boinc base url: https://fold.it/
checking updates...
database
local: 'dfe54b7a9f1f2afed6da169a1ec068c1'
remote: 'dfe54b7a9f1f2afed6da169a1ec068c1'
resources
local: 'aa03fbaea1c239a108db7f631a1cf9ea'
remote: 'aa03fbaea1c239a108db7f631a1cf9ea'
binary
local: '87c454053029f8ccfbb284def549d226'
remote: '87c454053029f8ccfbb284def549d226'
cleaning up old components:
binary 00000000000000000000000000000000
resources 00000000000000000000000000000000
binary 87c454053029f8ccfbb284def549d226
database dfe54b7a9f1f2afed6da169a1ec068c1
resources aa03fbaea1c239a108db7f631a1cf9ea
SoundTheme::load: cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources/sounds/organic_01
loading: cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources/sounds/organic_01/rotamer_land_00.ogg
loading: cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources/sounds/organic_01/rotamer_land_01.ogg
loading: cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources/sounds/organic_01/rotamer_land_02.ogg
loading: cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources/sounds/organic_01/rotamer_land_03.ogg
loading: cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources/sounds/organic_01/rotamer_land_04.ogg
loading: cmp-resources-aa03fbaea1c239a108db7f631a1cf9ea/resources/sounds/organic_01/rotamer_land_05.ogg
SVM classifier successfully loaded
Feature list successfully loaded
Valid classifier feature list
about to create view_options_button_
Duplicate hotkey Shift+L (Show outlines, )
setting side chain mode to: 1 Show Stubs
ViewOptionsWidget::refresh()
Converting any old-style quicksaves and autosaves...
Playing: sounds/organic_01/splashscreen.ogg
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 6356 residue types
core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 1836 residue types
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine
basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/standard_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt
basic.io.database: Database file opened: scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt
basic.io.database: Database file opened: scoring/score_functions/MembranePotential/memcbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/MembranePotential/mem_pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp
basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4
core.fragment.picking_old.vall.vall_io: Reading Vall library from cmp-database-dfe54b7a9f1f2afed6da169a1ec068c1/rosetta_database/sampling/vall.small.dat.2001-02-02 ...
core.fragment.picking_old.vall.vall_io: ... done. Read 50000 lines. Time elapsed: 0 seconds.
core.fragment.picking_old.vall.vall_io: Prior library contained 0 sections totaling 0 residues.
core.fragment.picking_old.vall.vall_io: Added 268 sections to library totaling 50000 residues.
Reading in vall_torsions file: cmp-database-dfe54b7a9f1f2afed6da169a1ec068c1/rosetta_database/chemical/rna/1jj2.torsions
Lines read from vall_torsions file: 2754
About to show the puzzle screen...
Trying to get the puzzle list...
Loading cache...
Parsing puzzle URL...
Parsing contests...
Parsing macros...
Saving the cache...
Parsing level completion...
Initting the list...
Got the puzzles...
Finished show_puzzle_screen...

Joined: 06/17/2010

It is overwritten every time you run Foldit.
We need log.txt saved when crash occur, copied b4 you open client again.

trpv1's picture
User offline. Last seen 7 years 34 weeks ago. Offline
Joined: 08/15/2011
Groups: None

sorry, I was expecting for this and will keep it on my mind. However, hopefully there won't be a crash again.

Joined: 01/24/2012
Groups: None

This happens every time I play, on Windows 7

beta_helix's picture
User offline. Last seen 8 hours 6 min ago. Offline
Joined: 05/09/2008
Groups: None

please attached the end of your log.txt, thanks!

Joined: 01/24/2012
Groups: None

here

EDIT by beta_helix:
end of log.txt:

setting side chain mode to: 1 Show Stubs
Problem in calculating overlap between atoms. Terminating calculation.
radius_a: 2.665, radius_b: 3.0115, distance_ijxyz: 2.50021199, cosine theta: -1.#IND
ERROR:: Exit from: ..\..\..\rosetta_source\src\core\scoring\sasa.cc line: 215

UNHANDLED EXCEPTION
1: library_main +3475875 bytes (no line)
2: library_main +2294633 bytes (no line)
3: library_main +2341811 bytes (no line)
4: library_main +2925731 bytes (no line)
5: library_main +2343094 bytes (no line)
6: library_main +2216321 bytes (no line)
7: library_main +2137726 bytes (no line)
8: library_main +2512711 bytes (no line)
9: library_main +706106 bytes (no line)
10: library_main +2121709 bytes (no line)
11: library_main +2121491 bytes (no line)
12: library_main +15035 bytes (no line)
13: library_main +32 bytes (no line)
14: no symbol (no line)
15: no symbol (no line)
16: no symbol (no line)
17: BaseThreadInitThunk +18 bytes (no line)
18: RtlInitializeExceptionChain +239 bytes (no line)
19: RtlInitializeExceptionChain +194 bytes (no line)

Joined: 01/24/2012
Groups: None

Is there anything I can do to fix the problem? This happens every time I try to play, and I really would like to actually be able to play for once.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons