puzzle picture
481: Unsolved Nanog Transcription Factor 2
Status: Closed

Summary

Name: 481: Unsolved Nanog Transcription Factor 2
Status: Closed
Created: 11/14/2011
Points: 175
Expired: 11/28/2011 - 23:59
Difficulty: Intermediate
Description: We are posting 10 more starts for the unsolved Nanog protein (while it's still fresh in your mind). Resetting the puzzle will cycle through 10 Quark server predictions that are also in the Alignment Tool so you can use partial threading. This puzzle will be up for 2 weeks and worth 175 global points! More info in the puzzle comments and blog: http://fold.it/portal/node/991003
Categories: Overall, Prediction

Top Groups

RankGroupScorePoints
1Void Crushers10,979175
2Anthropic Dreams10,956149
3foldeRNA10,859126
4Go Science10,814106
5Russian team10,77889

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Top Soloists

RankPlayerGroupScorePoints
1mat747 79 217 Void Crushers10,951175
2anthunk 79 1590 Anthropic Dreams10,928174
3pvc78 79 27  10,899172
4scottyler89 79 1590 foldeRNA10,859170
5arcsign 79 1032  10,844168


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Comments

beta_helix's picture
User offline. Last seen 18 hours 54 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info in the blog: http://fold.it/portal/node/991003

You can see the 10 Quark Server results (where you'll find secondary structure & burial predictions) here:
http://zhanglab.ccmb.med.umich.edu/QUARK/output/Q14089/

Additional information on partial threading here:

http://fold.it/portal/node/989193#comment-9965

Please make sure to try out all 10 starting server models, since we have no clue which one is closer to the correct native structure.

spmm's picture
User offline. Last seen 41 weeks 4 days ago. Offline
Joined: 08/05/2010
Groups: Void Crushers
randomly spinning jmols

it is great that we can see the jmol for each alignment excellent in a side by side comparision - however I found that if I tried to line them up to compare them they started spinning randomly which defeated my purpose.

beta_helix's picture
User offline. Last seen 18 hours 54 min ago. Offline
Joined: 05/09/2008
Groups: None
sadly those are created by the Zhang server

we have no control over that page.

They are the same models as your starting structures, however, so you can save the starting model and load it in as a guide to compare between them.

Hopefully that helps a bit!

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons