new function to implement ( for exposed ss)
| Case number: | 699969-990201 |
| Topic: | General |
| Opened by: | firejuggler |
| Status: | Open |
| Type: | Suggestion |
| Opened on: | Saturday, August 20, 2011 - 16:27 |
| Last modified: | Wednesday, August 31, 2011 - 09:01 |
Following a discusion on the global channel, I suggest 2 new function, one, at least allready been asked.
a isHydrophobic(Boolean) and a SSisExposed(Boolean). Since the hydrophobic state and 'exposed' state are already determined (on the fly for exposed), there should not be much data manipulation.
Combine those 2 with a rebuild loop and you have a base idea for a script.
Wed, 08/31/2011 - 09:01
#2
well, to find exposed i tried to combine the low hiding score, ishydrophobic and distance between said segment and other segment ( in rosetta, a segment is supposed to be exposed if it has less than 18 other co-segment in a range of less than 10 angstrom)
I tried to do this with my last script availlable here http://fold.it/portal/recipe/31284
It can be useful.
Maybe there is thershold for negative hidding score part that indicating that? ie <-20 is exposed, and >=-19 is not yet exposed.