puzzle picture
434: De-novo Freestyle 9
Status: Closed

Summary

Name: 434: De-novo Freestyle 9
Status: Closed
Created: 06/27/2011
Points: 100
Expired: 07/05/2011 - 07:00
Difficulty: Advanced
Description: We are giving you this currently unsolved protein as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.
Categories: Overall, Prediction

Top Groups

RankGroupScorePoints
1foldeRNA11,065100
2Void Crushers10,86079
3Contenders10,84962
4Anthropic Dreams10,81548
5Go Science10,65837

Top Evolvers

Top Soloists

RankPlayerGroupScorePoints
1wld333 78 1431 foldeRNA10,959100
2marie_s 78 1431  10,87998
3spmm 78 1431 Void Crushers10,86095
4wudoo 78 351 foldeRNA10,84892
5Mark- 78 1431 Contenders10,81990


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Comments

beta_helix's picture
User offline. Last seen 11 hours 57 min ago. Offline
Joined: 05/09/2008
Groups: None
Please try to use these secondary structure predictions:

These secondary structure predictions have been pre-loaded into this freestyle puzzle.

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 18 is highly predicted to be part of a sheet. However, the Leucines at residue 122-123 are highly predicted to be in a helix.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons