contact map idea

Case number:845813-989819
Topic:Game: Tools
Opened by:lynnai
Opened on:Monday, June 6, 2011 - 16:59
Last modified:Saturday, June 11, 2011 - 21:16

I have no idea how easy this would be to implement but I think it ought to be simple.

So currently if there is contact at an intersection there is a black dot in the square, that square can be various shades of red to indicate value, a black box turns on when an intersection is selected. I think it would be fantastic if a box of a different colour would turn on to indicate band positions.

Now it would be really super awesome if you could create the bands in the contact map for greater accuracy... however that might get more complicated on the implimentation and might make life too easy for us. ;-) But a girl can dream can't she?

(Mon, 06/06/2011 - 16:59  |  5 comments)

Joined: 06/17/2010

Yes, banding via contact map would be cool.
My thinking is to mark contact you need then use special button "add bands".
Band are already placed should be visible as another color in contact map too.

beta_helix's picture
User offline. Last seen 1 week 3 days ago. Offline
Joined: 05/09/2008
Groups: None

That is a great suggestion, assigning...

spmm's picture
User offline. Last seen 7 weeks 1 day ago. Offline
Joined: 08/05/2010
Groups: Void Crushers

imho it is faster to make bands manually than to find the right box on the contact map to create a band but perhaps I'm missing something?

infjamc's picture
User offline. Last seen 6 days 17 hours ago. Offline
Joined: 02/20/2009
Groups: Contenders

Not if you want to add a band for every selected cell on the contact map...

Joined: 06/17/2010

Maybe not every but sometimes I want to made over 10 bands in "proper" places. This can be very usefull.


Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons