puzzle picture
412: Electron Density Trace Puzzle
Status: Closed

Soloists

RankPlayerGroupScorePoints
226antibeingafish 76 1427  7,6031
227G23 76 1427  7,5981
228jfp999 76 1427  7,5771
229davidla 76 1427 Purdue BoilerFolders7,5761
230Christoph Stemp 76 1427  7,5741
231alexk47 76 1427  7,5721
232oaks 76 1427  7,5711
233nrizzle 76 1427  7,5681
234Sport 76 1427  7,5611
235selia 76 1427  7,5451
2364zrae1 76 1427  7,5451
237Haphazard 76 1427  7,5281
238mattwark 76 1427  7,5221
239Orayesh 76 1427  7,5161
240mrZalli 76 1427  7,5111
241HappyTchoum 76 1427  7,5101
242aka_jbond 76 1427  7,4951
243GWango 76 1427  7,4921
244wenskye 76 1427  7,4861
245mr.bean 76 1427  7,4801
246pikappa 76 1427  7,4711
247LeChatlier 76 1427  7,4691
248unforgiven95 76 1427  7,4571
249Jocky 76 1427  7,4441
250ronasouz 76 1427  7,4391


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Comments

Joined: 06/17/2010
Our goal is

to optimize it or make own folds?
Make totally fifferent aligement or "just" optimize existing one?

Joined: 02/23/2011
AA are probably where they should be?

I looked up Electron Density Trace and I got the impression that the method predicts where each AA probably is with some margin for error. So, does that mean we should try not to change their locations too much? Is there any chance you can show us the original results with the probabilities?

beta_helix's picture
User offline. Last seen 7 hours 52 min ago. Offline
Joined: 05/09/2008
Groups: None
thanks for asking!

Indeed, the data indicates that this model is close to the native geometrically but you can see that it needs a lot of work and optimization.

So drastic restructuring moves should not be necessary, but finding the native low-energy well should still be a challenge!

I will see if we can provide you with some of the experimental data, if not on this puzzle we can try it with future puzzles.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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