puzzle picture
412: Electron Density Trace Puzzle
Status: Closed

Soloists

RankPlayerGroupScorePoints
226antibeingafish 74 1556  7,6031
227G23 74 1556  7,5981
228jfp999 74 1556  7,5771
229davidla 74 1556 Purdue BoilerFolders7,5761
230Christoph Stemp 74 1556  7,5741
231alexk47 74 1556  7,5721
232oaks 74 336  7,5711
233nrizzle 74 1556  7,5681
234Sport 74 1556  7,5611
235selia 74 1556  7,5451
2364zrae1 74 1556  7,5451
237Haphazard 74 1556  7,5281
238mattwark 74 1556  7,5221
239Orayesh 74 1556  7,5161
240mrZalli 74 1556  7,5111
241HappyTchoum 74 1556  7,5101
242aka_jbond 74 1556  7,4951
243GWango 74 1556  7,4921
244wenskye 74 1556  7,4861
245mr.bean 74 1556  7,4801
246pikappa 74 1556  7,4711
247LeChatlier 74 1556  7,4691
248unforgiven95 74 1556  7,4571
249Jocky 74 1556  7,4441
250ronasouz 74 1556  7,4391


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Comments

Joined: 06/17/2010
Our goal is

to optimize it or make own folds?
Make totally fifferent aligement or "just" optimize existing one?

Joined: 02/23/2011
AA are probably where they should be?

I looked up Electron Density Trace and I got the impression that the method predicts where each AA probably is with some margin for error. So, does that mean we should try not to change their locations too much? Is there any chance you can show us the original results with the probabilities?

beta_helix's picture
User offline. Last seen 19 hours 24 min ago. Offline
Joined: 05/09/2008
Groups: None
thanks for asking!

Indeed, the data indicates that this model is close to the native geometrically but you can see that it needs a lot of work and optimization.

So drastic restructuring moves should not be necessary, but finding the native low-energy well should still be a challenge!

I will see if we can provide you with some of the experimental data, if not on this puzzle we can try it with future puzzles.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons