puzzle picture
412: Electron Density Trace Puzzle
Status: Closed

Soloists

RankPlayerGroupScorePoints
201Bruschetta 78 1584  7,7341
202momadoc 78 420  7,7311
203Suep 78 1584  7,7301
204Mr.B 78 1584  7,7151
205ECKIMPOB 78 1584  7,7061
206O Seki To 30 25  7,7061
207littlelago123 78 1584  7,6951
208zebs124 78 1584  7,6901
209anna_k1729 78 1584  7,6851
210Traheran 78 1584  7,6781
211BFleming57 78 1584  7,6751
212Antibrad 78 1584  7,6681
213BastiStgt 78 1584  7,6681
214sielenk 78 1584  7,6591
215sabuelre 78 1584  7,6581
216n0r3k 78 1584 BOINC@Poland7,6551
217BuzzDee 78 1584 SETI.Germany7,6521
218E.G.Zander 78 1584  7,6441
219oxyi 78 1584  7,6431
220betti 78 1584  7,6371
221cfmxet 78 1584  7,6301
222aspadistra 78 227 DSN @ Home7,6241
223vagarwal 78 1584  7,6221
224Wynton Goulding 78 1584  7,6141
225jozaskok 78 1584  7,6031


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Comments

Joined: 06/17/2010
Our goal is

to optimize it or make own folds?
Make totally fifferent aligement or "just" optimize existing one?

Joined: 02/23/2011
AA are probably where they should be?

I looked up Electron Density Trace and I got the impression that the method predicts where each AA probably is with some margin for error. So, does that mean we should try not to change their locations too much? Is there any chance you can show us the original results with the probabilities?

beta_helix's picture
User offline. Last seen 5 days 15 hours ago. Offline
Joined: 05/09/2008
Groups: None
thanks for asking!

Indeed, the data indicates that this model is close to the native geometrically but you can see that it needs a lot of work and optimization.

So drastic restructuring moves should not be necessary, but finding the native low-energy well should still be a challenge!

I will see if we can provide you with some of the experimental data, if not on this puzzle we can try it with future puzzles.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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