puzzle picture
412: Electron Density Trace Puzzle
Status: Closed

Soloists

RankPlayerGroupScorePoints
201Bruschetta 79 1476  7,7341
202momadoc 79 363  7,7311
203Suep 79 1476  7,7301
204Mr.B 79 1476  7,7151
205ECKIMPOB 79 1476  7,7061
206O Seki To 79 26  7,7061
207littlelago123 79 1476  7,6951
208zebs124 79 1476  7,6901
209anna_k1729 79 1476  7,6851
210Traheran 79 1476  7,6781
211BFleming57 79 1476  7,6751
212Antibrad 79 1476  7,6681
213BastiStgt 79 1476  7,6681
214sielenk 79 1476  7,6591
215sabuelre 79 1476  7,6581
216n0r3k 79 1476 BOINC@Poland7,6551
217BuzzDee 79 1476 SETI.Germany7,6521
218E.G.Zander 79 1476  7,6441
219oxyi 79 1476  7,6431
220betti 79 1476  7,6371
221cfmxet 79 1476  7,6301
222aspadistra 79 160 DSN @ Home7,6241
223vagarwal 79 1476  7,6221
224Wynton Goulding 79 1476  7,6141
225jozaskok 79 1476  7,6031


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Comments

Joined: 06/17/2010
Our goal is

to optimize it or make own folds?
Make totally fifferent aligement or "just" optimize existing one?

Joined: 02/23/2011
AA are probably where they should be?

I looked up Electron Density Trace and I got the impression that the method predicts where each AA probably is with some margin for error. So, does that mean we should try not to change their locations too much? Is there any chance you can show us the original results with the probabilities?

beta_helix's picture
User offline. Last seen 2 days 14 hours ago. Offline
Joined: 05/09/2008
Groups: None
thanks for asking!

Indeed, the data indicates that this model is close to the native geometrically but you can see that it needs a lot of work and optimization.

So drastic restructuring moves should not be necessary, but finding the native low-energy well should still be a challenge!

I will see if we can provide you with some of the experimental data, if not on this puzzle we can try it with future puzzles.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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