puzzle picture
412: Electron Density Trace Puzzle
Status: Closed

Soloists

RankPlayerGroupScorePoints
176elengul 81 1314  8,0611
177tyler0911 59 15 Anthropic Dreams8,0421
178DC1600 81 1314 Anthropic Dreams8,0381
179dar0n 81 1314  7,9991
180kbob 81 1314  7,9651
181rawzko 81 1314  7,9641
182iamleslie 81 1314  7,9411
183Ladenhorcher 81 1314 Crunching Family7,9381
184George Chow 81 1314 Team China7,9191
185dglion 81 1314  7,8821
186Seneca 81 1314 Crunching Family7,8811
187Bluefire526 81 1314  7,8481
188snidekid 81 1314  7,8471
189djag 81 1314 Contenders7,8441
190monigft 81 1314  7,8391
191Arne Heessels 81 204  7,8281
192animalo 81 1314  7,8141
193Nyorn 81 1314  7,8011
194kkwizard101 81 1314  7,8001
195Seedman 81 1314  7,7971
196DragonBlade 81 1314  7,7901
197CrosscutJERP 81 1314  7,7711
198hat 81 1314  7,7461
199james1galvin 81 1314  7,7401
200darioarena 81 1314  7,7381


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Comments

Joined: 06/17/2010
Our goal is

to optimize it or make own folds?
Make totally fifferent aligement or "just" optimize existing one?

Joined: 02/23/2011
AA are probably where they should be?

I looked up Electron Density Trace and I got the impression that the method predicts where each AA probably is with some margin for error. So, does that mean we should try not to change their locations too much? Is there any chance you can show us the original results with the probabilities?

beta_helix's picture
User offline. Last seen 1 hour 44 min ago. Offline
Joined: 05/09/2008
Groups: None
thanks for asking!

Indeed, the data indicates that this model is close to the native geometrically but you can see that it needs a lot of work and optimization.

So drastic restructuring moves should not be necessary, but finding the native low-energy well should still be a challenge!

I will see if we can provide you with some of the experimental data, if not on this puzzle we can try it with future puzzles.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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