puzzle picture
412: Electron Density Trace Puzzle
Status: Closed

Soloists

RankPlayerGroupScorePoints
176elengul 79 1590  8,0611
177tyler0911 79 71 Anthropic Dreams8,0421
178DC1600 79 1590 Anthropic Dreams8,0381
179dar0n 79 1590  7,9991
180kbob 79 1590  7,9651
181rawzko 79 1590  7,9641
182iamleslie 79 1590  7,9411
183Ladenhorcher 79 1590 Crunching Family7,9381
184George Chow 79 1590 Team China7,9191
185dglion 79 1590  7,8821
186Seneca 79 1590 Crunching Family7,8811
187Bluefire526 79 1590  7,8481
188snidekid 79 1590  7,8471
189djag 79 1590 Contenders7,8441
190monigft 79 1590  7,8391
191Arne Heessels 79 155  7,8281
192animalo 79 1590  7,8141
193Nyorn 79 1590  7,8011
194kkwizard101 79 1590  7,8001
195Seedman 79 1590  7,7971
196DragonBlade 79 1590  7,7901
197CrosscutJERP 79 1590  7,7711
198hat 79 1590  7,7461
199james1galvin 79 1590  7,7401
200darioarena 79 730  7,7381


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Comments

Joined: 06/17/2010
Our goal is

to optimize it or make own folds?
Make totally fifferent aligement or "just" optimize existing one?

Joined: 02/23/2011
AA are probably where they should be?

I looked up Electron Density Trace and I got the impression that the method predicts where each AA probably is with some margin for error. So, does that mean we should try not to change their locations too much? Is there any chance you can show us the original results with the probabilities?

beta_helix's picture
User offline. Last seen 6 days 14 hours ago. Offline
Joined: 05/09/2008
Groups: None
thanks for asking!

Indeed, the data indicates that this model is close to the native geometrically but you can see that it needs a lot of work and optimization.

So drastic restructuring moves should not be necessary, but finding the native low-energy well should still be a challenge!

I will see if we can provide you with some of the experimental data, if not on this puzzle we can try it with future puzzles.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons