puzzle picture
412: Electron Density Trace Puzzle
Status: Closed

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RankGroupScorePoints
1Contenders12,243100
2Anthropic Dreams12,23576
3Pauling's Pitbulls12,13956
4Slovak National Team11,81641
5Void Crushers11,67630
6Go Science11,51621
7foldeRNA11,42115
8L'Alliance Francophone11,38711
9Russian team11,3797
10Natural Abilities11,0435
11SETI.Germany11,0093
12Free-DC10,8072
13Team Tornado10,4172
14Ninjas10,3361
15Another Hour Another Point9,5521
16Extraterrestrials9,1231
17E?????! Heureka!9,0431
18Czech National Team8,8821
19Boinc.be8,6981
20Richard Dawkins Foundation8,4851
21Team Commonwealth8,2951
22Crunching Family8,2491
23Team China7,9191
24BOINC@Poland7,6551
25DSN @ Home7,6241


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Comments

Joined: 06/17/2010
Our goal is

to optimize it or make own folds?
Make totally fifferent aligement or "just" optimize existing one?

Joined: 02/23/2011
AA are probably where they should be?

I looked up Electron Density Trace and I got the impression that the method predicts where each AA probably is with some margin for error. So, does that mean we should try not to change their locations too much? Is there any chance you can show us the original results with the probabilities?

beta_helix's picture
User offline. Last seen 6 days 7 hours ago. Offline
Joined: 05/09/2008
Groups: None
thanks for asking!

Indeed, the data indicates that this model is close to the native geometrically but you can see that it needs a lot of work and optimization.

So drastic restructuring moves should not be necessary, but finding the native low-energy well should still be a challenge!

I will see if we can provide you with some of the experimental data, if not on this puzzle we can try it with future puzzles.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons