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282: Mini-CASP 20 - Quick Freestyle 2
Status: Closed

Summary

Name: 282: Mini-CASP 20 - Quick Freestyle 2
Status: Closed
Created: 04/03/2010
Points: 100
Expired: 04/06/2010 - 15:00
Difficulty: Advanced
Description: Here is Mini-CASP 20 again, this time with the secondary structure predictions. We want to see how well you can do in just a couple days when starting from an extended chain, before we give you alignments to work with. The secondary structure predictions are posted in the puzzle comments. We hope they help!
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Comments

beta_helix's picture
User offline. Last seen 7 hours 1 min ago. Offline
Joined: 05/09/2008
Groups: None
Please try to use these secondary structure predictions:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Phenylalanine at residue 120 is highly predicted to be part of a sheet. However, the Lysine at residue 43 is predicted to have an equal probability of being anything.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons