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278: Mini-CASP 19 - Freestyle Part Deux
Status: Closed

Summary

Name: 278: Mini-CASP 19 - Freestyle Part Deux
Status: Closed
Created: 03/24/2010
Points: 100
Expired: 03/31/2010 - 23:00
Difficulty: Advanced
Description: As promised, this puzzle is an exact repost of puzzle 274: Mini-CASP 19 - Just Freestyle, but this time we are giving you some secondary structure predictions. These secondary structure predictions are posted in the puzzle comments. We hope they help!
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Comments

beta_helix's picture
User offline. Last seen 1 day 6 hours ago. Offline
Joined: 05/09/2008
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Secondary structure prediction results:

Please try to use these secondary structure predictions:

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 7 is highly predicted to be part of a helix. However, the Alanine at residue 11 is predicted to have an equal probability of being anything!

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons