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239: Mini-CASP 13 - Freestyle
Status: Closed

Summary

Name: 239: Mini-CASP 13 - Freestyle
Status: Closed
Created: 12/15/2009
Points: 100
Expired: 12/27/2009 - 23:00
Difficulty: Advanced
Description: Mini-CASP 13 is another de-novo (or ab-initio) target. This means that there is no solved structure that has a similar sequence that we can start our predictions from. Since we have no idea where to even start, we are giving you an extended chain to see what you come up with. Good luck freestyle folding! The secondary structure prediction is posted in the puzzle comments.
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Comments

Joined: 08/23/2009
Groups: None
When will it be releqsed?

Status says unreleased and I don't see it in my application.
When will it be available?

Txs.

beta_helix's picture
User offline. Last seen 1 day 1 hour ago. Offline
Joined: 05/09/2008
Groups: None
Secondary structure prediction results:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 109 is highly predicted to be part of a helix. However, the Alanine at residue 26 is predicted to have an equal probability of being anything!

RE: SPooks753

It was on hold until the previous puzzles expired!

Joined: 08/23/2009
Groups: None
Thank you

Okay I didn't understand that the previous puzzle had to expire. Thanks for the new toy 8-)

beta_helix's picture
User offline. Last seen 1 day 1 hour ago. Offline
Joined: 05/09/2008
Groups: None
we don't want too many puzzles up at a time...

normally I put a new puzzle up manually, but since the 4 puzzles ended on a Sunday I didn't want to forget to put up the new puzzle (that's why it was unreleased and set to post automatically).

I should have another puzzle up later today as well...

Take care!

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons