puzzle picture
212: Mini-CASP 8-Freestyle
Status: Closed


Name: 212: Mini-CASP 8-Freestyle
Status: Closed
Created: 10/20/2009
Points: 100
Expired: 10/28/2009 - 23:00
Difficulty: Advanced
Description: Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be difficult since this chain has 149 residues, so we will release Rosetta predictions for this target next week. Until then, good luck freestyle folding! The secondary structure prediction will be posted in the puzzle comments.

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1aap 103 2325 Richard Dawkins Foundation11,150100
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Joined: 05/09/2008
Groups: None
secondary structure predictions will be here... eventually!

The secondary structure sequence logo predictions are still running, but I will post them here as soon as I get them back from the SAM server.
(I think the server queue might be very long right now or something)

Joined: 05/09/2008
Groups: None
secondary structure prediction results:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 120 is highly predicted to be part of a helix. However, the Valine at residue 110 is predicted to have an equal probability of being anything.

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