212: Mini-CASP 8-Freestyle

Summary

Name:

Status:

Closed

Created:

10/20/2009

Points:

100

Expired:

10/28/2009 - 23:00

Difficulty:

Advanced

Description:

Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be difficult since this chain has 149 residues, so we will release Rosetta predictions for this target next week. Until then, good luck freestyle folding! The secondary structure prediction will be posted in the puzzle comments.

Categories:

Rank

Group

Score

Points

Richard Dawkins Foundation

11,150

100

Another Hour Another Point

10,872

Void Crushers

10,843

Contenders

10,604

Crunching Family

10,437

Rank

Player

Group

Score

Points

drbh 78 1584

Richard Dawkins Foundation

11,088

100

setiman 78 1584

Richard Dawkins Foundation

11,087

maxwell_thethird 78 1584

Richard Dawkins Foundation

11,073

spvincent 32 26

10,872

Guyoni 78 1584

10,864

Rank

Player

Group

Score

Points

aap 78 1584

Richard Dawkins Foundation

11,150

100

10,960

10,843

10,816

10,733

Thu, 10/22/2009 - 00:23

beta_helix 78 1584

Offline

Joined: 05/09/2008

Groups: None

secondary structure predictions will be here... eventually!

The secondary structure sequence logo predictions are still running, but I will post them here as soon as I get them back from the SAM server.
(I think the server queue might be very long right now or something)

Thu, 10/22/2009 - 21:55

beta_helix 78 1584

Offline

Joined: 05/09/2008

Groups: None

secondary structure prediction results:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 120 is highly predicted to be part of a helix. However, the Valine at residue 110 is predicted to have an equal probability of being anything.