Summary

Name:	206: Mini-CASP 6-Freestyle
Status:	Closed
Created:	10/07/2009
Points:	100
Expired:	10/13/2009 - 23:00
Difficulty:	Advanced
Description:	Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be very difficult, since this blind prediction has 121 residues, so we will give you Rosetta@home predictions for this target next week. Until then, good luck freestyle folding! We will post the secondary structure predictions for this puzzle in the puzzle comments.
Categories:

Top Groups

Rank	Group	Score	Points
1	Void Crushers	10,632	100
2	Richard Dawkins Foundation	10,534	78
3	Russian team	10,284	60
4	Contenders	10,278	46
5	ExPitneyFolders	10,251	34

Show all >

Top Evolvers

Rank	Player	Group	Score	Points
1	Milward 172 15968	Void Crushers	10,612	100
2	TheGUmmer 74 111	Void Crushers	10,609	93
3	setiman 172 15968	Richard Dawkins Foundation	10,424	90
4	maxwell_thethird 172 15968	Richard Dawkins Foundation	10,422	86
5	Tamison 172 15968	Richard Dawkins Foundation	10,407	83

Show all >

Top Soloists

Rank	Player	Group	Score	Points
1	steveB 95 158	Void Crushers	10,632	100
2	aap 172 15968	Richard Dawkins Foundation	10,534	97
3	vakobo 172 4969	Russian team	10,284	93
4	CharlieFortsCon... 16 19	Contenders	10,251	90
5	Milward 172 15968	Void Crushers	10,251	86

Show all >

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Comments

Wed, 10/07/2009 - 23:53

beta_helix 172 15968

Offline

Joined: 05/09/2008

Groups: None

secondary structure predictions will be here!

As soon as I get the sequence logo secondary structure predictions back from the SAM server
(http://compbio.soe.ucsc.edu/SAM_T08/faq.html)
I will post them here!

Thu, 10/08/2009 - 00:16

beta_helix 172 15968

Offline

Joined: 05/09/2008

Groups: None

Secondary structure prediction results:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 101 is highly predicted to be part of a sheet. However, the Alanine at residue 61 is predicted to have an equal probability of being anything.

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