puzzle picture
200: Mini-CASP 4-Freestyle
Status: Closed

Summary

Name: 200: Mini-CASP 4-Freestyle
Status: Closed
Created: 09/22/2009
Points: 100
Expired: 09/29/2009 - 23:00
Difficulty: Advanced
Description: Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be very difficult, since this blind prediction has 138 residues, so we will release a Rosetta prediction for this target later this week. Until then, good luck freestyle folding! As suggested in the feedback the secondary structure prediction is posted in the puzzle comments.
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Comments

beta_helix's picture
User offline. Last seen 18 hours 57 min ago. Offline
Joined: 05/09/2008
Groups: None
secondary structure prediction results:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Cysteine at residue 110 is highly predicted to be part of a helix. However, the Leucine at residue 64 is predicted to have an equal probability of being anything.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons