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Joined: 06/09/2008
Groups: None

Hi all
I just discovered this site and am enjoying learning about folds through this interactive interface. I would like to use this software to try folding my protein of interest in it's entirety from the set of individual folds and secondary structures I have identified within it. Is this possible?
Alternatively, can someone point me in the direction of a good way to piece together all my separate .pdb files and secondary structures into one manipulatable structure. Thanks!
Greg Palardy

krapnik's picture
User offline. Last seen 52 years 28 weeks ago. Offline
Joined: 06/16/2008
Groups: KSICHT

Have you tried Modeller [[http://salilab.org/modeller/]] or SwissModel [[http://swissmodel.expasy.org/SWISS-MODEL.html]].
They worked for my diploma thesis.


Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons