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zzzzort's picture
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I guess this is a question for the people running this: What exactly does the score correspond to? I assume you're trying to minimize some kind of energy, but which metric do you use? Thanks.

feet1st's picture
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it's kcal/mol

This was a topic of discussion over on Rosetta@home.
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=3578

The lower the energy required to hold the whole thing together, the more likely it is close to the natural form of the protein, and the higher your score.

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