Puzzle 2174 : [ ERROR ] UtilityExitException

Case number:845829-2013392
Topic:Crash/Hang
Opened by:naniewoo
Status:Open
Type:Bug
Opened on:Tuesday, July 19, 2022 - 06:23
Last modified:Tuesday, August 9, 2022 - 05:26

Hi,

Please find below the steps and information to reproduce the crash in puzzle 2174 when recipe 45296 is used on a Mac.
I have uploaded the current situation of the puzzle to the "Shared Solution".

Issue in Puzzle : 2174 : Symmetric Pentamer Design with AlphaFold Predictions
Recipe used : Asymmetry Symmetry Maker (45296)

Operating System : Mac Catalina Version 10.15.7

Computer System Used :

Model name: iMac
Model designation: iMac13,1
Processor name: Quad-Core Intel Core i5
Proces speed: 2,9 GHz
Number of processors: 1
Total cores: 4
L2-cache (per core): 256 KB
L3-cache: 6 MB
Memory: 8 GB
Boot ROM verson: 429.0.0.0.0
SMC-version (system): 2.9f5

Steps to reproduce the crash :

1/ Run the recipe, 45296, on the segment of the protein.
2/ Leave the checkbox "First Run" selected.
3/ Run the option "Y - Mutate Sidechain to their best identities!".
4/ Run the option "W - Wiggle backbone and Sidechains!"

6/ Run the recipe, 45296, again, but with the checkbox "First Run", not selected.
7/ Run the option "Y - Mutate Sidechain to their best identities!".

Then the crash occurs. I suspect, as the recipe doesn't take in consideration, the bonds created in the first run and their strength and adds possibly more bonds, the calculation is out of index : amount of bonds * strength * segments?

Crash Report :
Process: Foldit [635]
Path: /Applications/Foldit.app/Contents/MacOS/Foldit
Identifier: edu.washington.foldit
Version: 1.0
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: Foldit [635]
User ID: 501

Date/Time: 2022-07-19 08:13:07.512 +0200
OS Version: Mac OS X 10.15.7 (19H1922)
Report Version: 12
Anonymous UUID: F34F00FA-199E-F682-F13F-21AF929E7CB2

Time Awake Since Boot: 1800 seconds

System Integrity Protection: enabled

Crashed Thread: 16

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called
terminating with uncaught exception of type utility::UtilityExitException:

File: /Users/koepnick/rosetta_local/interactive_release/source/src/interactive/rosetta_util/ReferencePoseInfo.cc:454
[ ERROR ] UtilityExitException
ERROR: from_residue.type().is_disulfide_bonded(): An out-of-bounds constraint atom index was found on a non-disulfide bonded residue (origin residue of band).

Thread 0:: Dispatch queue: com.apple.main-thread
0 com.apple.GeForceGLDriver 0x00007fff28950b17 0x7fff282e3000 + 6740759
1 com.apple.GeForceGLDriver 0x00007fff285a0903 0x7fff282e3000 + 2873603
2 com.apple.GeForceGLDriver 0x00007fff285a0f48 0x7fff282e3000 + 2875208
3 com.apple.GeForceGLDriver 0x00007fff285df950 gldUpdateDispatch + 1213
4 GLEngine 0x00007fff38724fc3 gleDoDrawDispatchCore + 693
5 GLEngine 0x00007fff386e35ce glDrawArraysOrElements_ListExec + 283
6 GLEngine 0x00007fff3867bd64 gleCallList + 156
7 game_library.dylib 0x000000010717a168 interactive::geom::Cylinder::render(bool) const + 1874
8 game_library.dylib 0x000000010718ff3c interactive::geom::Viewport::on_render() + 1384
9 game_library.dylib 0x00000001071a2cab interactive::gui::Container::on_render() + 487
10 game_library.dylib 0x00000001071f10d5 interactive::gui::TopLevel::on_render() + 407
11 game_library.dylib 0x00000001072103ff cocoa_wrapper_render + 321
12 game_library.dylib 0x000000010720f755 -[CocoaOpenGLView drawRect:] + 68
13 com.apple.AppKit 0x00007fff2b63b7eb -[_NSOpenGLViewBackingLayer display] + 836
14 com.apple.QuartzCore 0x00007fff39623cad CA::Layer::display_if_needed(CA::Transaction*) + 757
15 com.apple.QuartzCore 0x00007fff39601fca CA::Context::commit_transaction(CA::Transaction*, double) + 334
16 com.apple.QuartzCore 0x00007fff39600bb4 CA::Transaction::commit() + 644
17 com.apple.AppKit 0x00007fff2b0db041 __62+[CATransaction(NSCATransaction) NS_setFlushesWithDisplayLink]_block_invoke + 266
18 com.apple.AppKit 0x00007fff2b7f9920 ___NSRunLoopObserverCreateWithHandler_block_invoke + 41
19 com.apple.CoreFoundation 0x00007fff2dcd813c __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23
20 com.apple.CoreFoundation 0x00007fff2dcd806c __CFRunLoopDoObservers + 457
21 com.apple.CoreFoundation 0x00007fff2dcd7604 __CFRunLoopRun + 884
22 com.apple.CoreFoundation 0x00007fff2dcd6c33 CFRunLoopRunSpecific + 466
23 com.apple.HIToolbox 0x00007fff2c8f2aad RunCurrentEventLoopInMode + 292
24 com.apple.HIToolbox 0x00007fff2c8f27c5 ReceiveNextEventCommon + 584
25 com.apple.HIToolbox 0x00007fff2c8f2569 _BlockUntilNextEventMatchingListInModeWithFilter + 64
26 com.apple.AppKit 0x00007fff2af3b3c9 _DPSNextEvent + 883
27 com.apple.AppKit 0x00007fff2af39c10 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
28 com.apple.AppKit 0x00007fff2af2b91e -[NSApplication run] + 658
29 game_library.dylib 0x0000000107215f25 cocoa_glue_start + 905
30 game_library.dylib 0x0000000107211f9f interactive::guiwrapper::cocoa::CocoaWrapper::start() + 29
31 game_library.dylib 0x0000000106e267f4 interactive::application::interactive_main(utility::vector1, std::__1::allocator >, std::__1::allocator, std::__1::allocator > > > const&, boost::function, boost::function, bool) + 3991
32 game_library.dylib 0x000000010770716e game::application::game_main(int, char**, char const*, game::application::ExecutableKindEnum) + 930
33 edu.washington.foldit 0x00000001034fc256 run_library_main(std::__1::basic_string, std::__1::allocator > const&, bool, std::__1::basic_string, std::__1::allocator > const&, int&, int, char**, std::__1::basic_string, std::__1::allocator >&) + 273
34 edu.washington.foldit 0x00000001034fbda6 main + 276
35 edu.washington.foldit 0x00000001034f96a4 start + 52

Thread 1:: AMCP Logging Spool
0 libsystem_kernel.dylib 0x00007fff67b4de26 semaphore_wait_trap + 10
1 com.apple.audio.caulk 0x00007fff61550b16 caulk::mach::semaphore::wait() + 16
2 com.apple.audio.caulk 0x00007fff615509b2 caulk::semaphore::timed_wait(double) + 106
3 com.apple.audio.caulk 0x00007fff615507c4 caulk::concurrent::details::worker_thread::run() + 30
4 com.apple.audio.caulk 0x00007fff615501e4 void* caulk::thread_proxy > >(void*) + 45
5 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 2:
0 libsystem_kernel.dylib 0x00007fff67b4de26 semaphore_wait_trap + 10
1 com.apple.audio.caulk 0x00007fff61550b16 caulk::mach::semaphore::wait() + 16
2 com.apple.audio.caulk 0x00007fff615509b2 caulk::semaphore::timed_wait(double) + 106
3 com.apple.audio.caulk 0x00007fff615507c4 caulk::concurrent::details::worker_thread::run() + 30
4 com.apple.audio.caulk 0x00007fff615501e4 void* caulk::thread_proxy > >(void*) + 45
5 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 3:: com.apple.audio.IOThread.client
0 libsystem_kernel.dylib 0x00007fff67b4ddea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff67b4e160 mach_msg + 60
2 com.apple.audio.CoreAudio 0x00007fff2d3a9bf1 HALB_MachPort::SendSimpleMessageWithSimpleReply(unsigned int, unsigned int, int, int&, bool, unsigned int) + 111
3 com.apple.audio.CoreAudio 0x00007fff2d2a5d88 invocation function for block in HALC_ProxyIOContext::HALC_ProxyIOContext(unsigned int, unsigned int) + 2677
4 com.apple.audio.CoreAudio 0x00007fff2d3d9b9e HALB_IOThread::Entry(void*) + 72
5 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 4:
0 libsystem_kernel.dylib 0x00007fff67b50872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67c15425 _pthread_cond_wait + 698
2 com.apple.GeForceMTLDriver 0x00007fff29434cbb 0x7fff292c8000 + 1494203
3 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 5:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff67b4ddea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff67b4e160 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2dcd8d07 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff2dcd77c1 __CFRunLoopRun + 1329
4 com.apple.CoreFoundation 0x00007fff2dcd6c33 CFRunLoopRunSpecific + 466
5 com.apple.AppKit 0x00007fff2b0dcbf4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 6:
0 libsystem_kernel.dylib 0x00007fff67b50746 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff67ad3eea nanosleep + 196
2 libsystem_c.dylib 0x00007fff67ad3de4 usleep + 53
3 game_library.dylib 0x000000010702007a interactive::application::appposeview::VoidGeom::VoidThread::operator()() + 162
4 game_library.dylib 0x00000001072e0421 interactive::util::Thread::thread_entry_func() + 39
5 game_library.dylib 0x00000001072dfea4 interactive::util::Thread::pthread_startup_helper(void*) + 36
6 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 7:
0 libsystem_kernel.dylib 0x00007fff67b50746 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff67ad3eea nanosleep + 196
2 libsystem_c.dylib 0x00007fff67ad3de4 usleep + 53
3 game_library.dylib 0x000000010700845a interactive::application::appposeview::HydrophobicComposite::HydroThread::operator()() + 196
4 game_library.dylib 0x00000001072e0421 interactive::util::Thread::thread_entry_func() + 39
5 game_library.dylib 0x00000001072dfea4 interactive::util::Thread::pthread_startup_helper(void*) + 36
6 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 8:
0 libsystem_kernel.dylib 0x00007fff67b50052 __psynch_mutexwait + 10
1 libsystem_pthread.dylib 0x00007fff67c12917 _pthread_mutex_firstfit_lock_wait + 83
2 libsystem_pthread.dylib 0x00007fff67c10937 _pthread_mutex_firstfit_lock_slow + 222
3 game_library.dylib 0x00000001071635a1 boost::unique_lock::lock() + 33
4 game_library.dylib 0x000000010701b8e2 interactive::application::appposeview::ResidueBurialComposite::ResidueBurialThread::operator()() + 114
5 game_library.dylib 0x00000001072e0421 interactive::util::Thread::thread_entry_func() + 39
6 game_library.dylib 0x00000001072dfea4 interactive::util::Thread::pthread_startup_helper(void*) + 36
7 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 9:
0 libsystem_kernel.dylib 0x00007fff67b50746 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff67ad3eea nanosleep + 196
2 libsystem_c.dylib 0x00007fff67ad3de4 usleep + 53
3 game_library.dylib 0x00000001073c4a85 standalone::application::StandaloneApplication::autosave_thread_body() + 25
4 game_library.dylib 0x00000001074072c0 void interactive::util::detail::checked_fxn_wrapper::operator()(interactive::util::access_ptr) + 136
5 game_library.dylib 0x00000001074071eb void boost::_bi::list1 > >::operator(), boost::_bi::list0>(boost::_bi::type, interactive::util::detail::checked_fxn_wrapper&, boost::_bi::list0&, int) + 57
6 game_library.dylib 0x000000010740711a boost::detail::function::void_function_obj_invoker0, boost::_bi::list1 > > >, void>::invoke(boost::detail::function::function_buffer&) + 26
7 game_library.dylib 0x00000001072e0421 interactive::util::Thread::thread_entry_func() + 39
8 game_library.dylib 0x00000001072dfea4 interactive::util::Thread::pthread_startup_helper(void*) + 36
9 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 10:
0 libsystem_kernel.dylib 0x00007fff67b50746 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff67ad3eea nanosleep + 196
2 libsystem_c.dylib 0x00007fff67ad3de4 usleep + 53
3 game_library.dylib 0x0000000107616444 game::application::BoincThread::periodically_send_and_check_boinc() + 692
4 game_library.dylib 0x00000001072e0421 interactive::util::Thread::thread_entry_func() + 39
5 game_library.dylib 0x00000001072dfea4 interactive::util::Thread::pthread_startup_helper(void*) + 36
6 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 11:
0 libsystem_kernel.dylib 0x00007fff67b560ee __select + 10
1 game_library.dylib 0x000000010777eecf game::util::IRC::run(boost::function) + 1083
2 game_library.dylib 0x000000010768a124 game::application::IRCThread::operator()() + 638
3 game_library.dylib 0x00000001072e0421 interactive::util::Thread::thread_entry_func() + 39
4 game_library.dylib 0x00000001072dfea4 interactive::util::Thread::pthread_startup_helper(void*) + 36
5 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 12:
0 libsystem_pthread.dylib 0x00007fff67c10b68 start_wqthread + 0

Thread 13:
0 libsystem_pthread.dylib 0x00007fff67c10b68 start_wqthread + 0

Thread 14:
0 libsystem_pthread.dylib 0x00007fff67c10b68 start_wqthread + 0

Thread 15:
0 libsystem_pthread.dylib 0x00007fff67c10b68 start_wqthread + 0

Thread 16 Crashed:
0 libsystem_kernel.dylib 0x00007fff67b5432a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff67c14e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff67adb808 abort + 120
3 libc++abi.dylib 0x00007fff64d40458 abort_message + 231
4 libc++abi.dylib 0x00007fff64d318a7 demangling_terminate_handler() + 238
5 libobjc.A.dylib 0x00007fff6686ea5f _objc_terminate() + 104
6 game_library.dylib 0x00000001076380e1 game::application::terminate_handler() + 145
7 libc++abi.dylib 0x00007fff64d3f887 std::__terminate(void (*)()) + 8
8 libc++abi.dylib 0x00007fff64d421a2 __cxxabiv1::failed_throw(__cxxabiv1::__cxa_exception*) + 27
9 libc++abi.dylib 0x00007fff64d42169 __cxa_throw + 113
10 game_library.dylib 0x0000000103c3ef7b utility::exit(char const*, int, std::__1::basic_string, std::__1::allocator > const&, int) + 77
11 game_library.dylib 0x0000000107281330 interactive::rosetta_util::ReferencePoseInfo::score_pose(std::__1::shared_ptr, core::scoring::ScoreFunction&, bool, utility::vector1 >, utility::vector1 >, bool) const + 9370
12 game_library.dylib 0x0000000106ee72ba interactive::application::actions::cart::PoseLoopThreadActionCart::update_game_pose_from_work_pose(bool) + 482
13 game_library.dylib 0x0000000106ee4fe7 interactive::application::actions::cart::PoseLoopThreadActionCart::on_thread_run() + 6799
14 game_library.dylib 0x0000000107087de8 void interactive::util::detail::checked_fxn_wrapper::operator()(interactive::util::access_ptr) + 136
15 game_library.dylib 0x0000000107087d13 void boost::_bi::list1 > >::operator(), boost::_bi::list0>(boost::_bi::type, interactive::util::detail::checked_fxn_wrapper&, boost::_bi::list0&, int) + 57
16 game_library.dylib 0x0000000107087c42 boost::detail::function::void_function_obj_invoker0, boost::_bi::list1 > > >, void>::invoke(boost::detail::function::function_buffer&) + 26
17 game_library.dylib 0x00000001072e0421 interactive::util::Thread::thread_entry_func() + 39
18 game_library.dylib 0x00000001072dfea4 interactive::util::Thread::pthread_startup_helper(void*) + 36
19 libsystem_pthread.dylib 0x00007fff67c15109 _pthread_start + 148
20 libsystem_pthread.dylib 0x00007fff67c10b8b thread_start + 15

Thread 16 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007000074f1000 rcx: 0x00007000074efbb8 rdx: 0x0000000000000000
rdi: 0x000000000001202b rsi: 0x0000000000000006 rbp: 0x00007000074efbe0 rsp: 0x00007000074efbb8
r8: 0x00007000074efa80 r9: 0x00000000000007fb r10: 0x00007000074f1000 r11: 0x0000000000000246
r12: 0x000000000001202b r13: 0x0000003000000008 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff67b5432a rfl: 0x0000000000000246 cr2: 0x00000001081f6994

Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133

Binary Images:
0x1034f8000 - 0x1034fdfff +edu.washington.foldit (1.0) /Applications/Foldit.app/Contents/MacOS/Foldit
0x103523000 - 0x1085aeff3 +game_library.dylib (0) <4B515612-493D-356C-9678-738943A8FCED> /Applications/Foldit.app/Contents/Resources/cmp-binary-1404994f8ca9f00ed67c509c1dba0c9a/game_library.dylib
0x11141a000 - 0x11141d047 libobjc-trampolines.dylib (787.1) <571C6A14-9E0E-3139-B82D-A1A3D46F2C9C> /usr/lib/libobjc-trampolines.dylib
0x111427000 - 0x1114b9267 dyld (750.7) /usr/lib/dyld
0x111d27000 - 0x111d2bfff com.apple.audio.AppleHDAHALPlugIn (283.15 - 283.15) /System/Library/Extensions/AppleHDA.kext/Contents/PlugIns/AppleHDAHALPlugIn.bundle/Contents/MacOS/AppleHDAHALPlugIn
0x111d34000 - 0x111e8efff com.apple.audio.units.Components (1.14 - 1.14) /System/Library/Components/CoreAudio.component/Contents/MacOS/CoreAudio
0x111ec1000 - 0x112321fff com.apple.audio.AudioDSPComponents (1.0 - 1) /System/Library/Components/AudioDSP.component/Contents/MacOS/AudioDSP
0x7fff282e3000 - 0x7fff28beffff com.apple.GeForceGLDriver (14.0.32 - 14.0.0) <8FC4962E-467A-3445-B617-C30A2B50C7B3> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/GeForceGLDriver
0x7fff28bf0000 - 0x7fff292c7fff libclh.dylib (14.0.32) <338EE130-1F07-3804-ACE9-9753D7E9A4F1> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/libclh.dylib
0x7fff292c8000 - 0x7fff2947bff3 com.apple.GeForceMTLDriver (14.0.32 - 14.0.0) <10F96890-7863-366E-9F90-F2A8F0AD968D> /System/Library/Extensions/GeForceMTLDriver.bundle/Contents/MacOS/GeForceMTLDriver
0x7fff2947c000 - 0x7fff29480ffb com.apple.agl (3.3.3 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff29869000 - 0x7fff29869fff com.apple.Accelerate (1.11 - Accelerate 1.11) /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x7fff2986a000 - 0x7fff29881ff7 libCGInterfaces.dylib (524.2.1) <69118118-1CEC-3019-A36E-3EC2FF1CAD8F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff29882000 - 0x7fff2a11dfcf com.apple.vImage (8.1 - 524.2.1) <4B6AB2C1-7CF5-3FDA-AC1C-04E531AB9BCE> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x7fff2a11e000 - 0x7fff2a2b3fef libBLAS.dylib (1303.60.1) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff2a2b4000 - 0x7fff2a5f5fff libBNNS.dylib (144.100.2) <69FA0C4F-B59D-374A-9DCF-E9FA79F332FD> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBNNS.dylib
0x7fff2a5f6000 - 0x7fff2a99dfff libLAPACK.dylib (1303.60.1) <6FEC8434-0C35-3528-A3DE-E3C78A748B6C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x7fff2a99e000 - 0x7fff2a9b3ffc libLinearAlgebra.dylib (1303.60.1) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib
0x7fff2a9b4000 - 0x7fff2a9b9ff3 libQuadrature.dylib (7) <371F36A7-B12F-363E-8955-F24F7C2048F6> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libQuadrature.dylib
0x7fff2a9ba000 - 0x7fff2aa2afff libSparse.dylib (103) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.dylib
0x7fff2aa2b000 - 0x7fff2aa3dff7 libSparseBLAS.dylib (1303.60.1) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparseBLAS.dylib
0x7fff2aa3e000 - 0x7fff2abd0fe3 libvDSP.dylib (735.140.1) <1586D162-55FD-3EC0-AFC7-975EAE2D0DD6> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x7fff2abd1000 - 0x7fff2ad4ffe7 libvMisc.dylib (735.140.1) <61CF1106-41C2-3971-9187-BD1D53C00343> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x7fff2ad50000 - 0x7fff2ad50fff com.apple.Accelerate.vecLib (3.11 - vecLib 3.11) <4686AE53-FD05-302C-AC20-C014EFC2305F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
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0x7fff65b37000 - 0x7fff65b4fff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff65b67000 - 0x7fff65c0eff7 libmecab.dylib (883.11) <0D5BFD01-D4A7-3C8D-AA69-C329C1A69792> /usr/lib/libmecab.dylib
0x7fff65c0f000 - 0x7fff65e71ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff661de000 - 0x7fff6620dfff libncurses.5.4.dylib (57) <995DFEEA-40F3-377F-B73D-D02AC59D591F> /usr/lib/libncurses.5.4.dylib
0x7fff6633d000 - 0x7fff667b9ff5 libnetwork.dylib (1880.120.5) /usr/lib/libnetwork.dylib
0x7fff6685a000 - 0x7fff6688cfde libobjc.A.dylib (787.1) <265783CE-6D74-36C9-B6D2-95D3910199EC> /usr/lib/libobjc.A.dylib
0x7fff6689f000 - 0x7fff668a3fff libpam.2.dylib (25.100.1) <0502F395-8EE6-3D2A-9239-06FD5622E19E> /usr/lib/libpam.2.dylib
0x7fff668a6000 - 0x7fff668dcfff libpcap.A.dylib (89.120.2) <86DAA475-805A-3E01-86C5-6CAE4D1D9BC6> /usr/lib/libpcap.A.dylib
0x7fff66960000 - 0x7fff66978fff libresolv.9.dylib (67.40.2) /usr/lib/libresolv.9.dylib
0x7fff6697a000 - 0x7fff669beff7 libsandbox.1.dylib (1217.141.9) /usr/lib/libsandbox.1.dylib
0x7fff669d2000 - 0x7fff669d3ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff669d4000 - 0x7fff66bb6ff7 libsqlite3.dylib (308.6) <3E17BEE7-19F3-329D-BBF9-1DD5D54913AD> /usr/lib/libsqlite3.dylib
0x7fff66dac000 - 0x7fff66e06ff8 libusrtcp.dylib (1880.120.5) /usr/lib/libusrtcp.dylib
0x7fff66e07000 - 0x7fff66e0affb libutil.dylib (57.140.1) <6EC380B0-FBB1-3AE3-8A09-1851E128C70F> /usr/lib/libutil.dylib
0x7fff66e0b000 - 0x7fff66e18fff libxar.1.dylib (425.7) <4EA640CD-74CE-3A79-ABB7-FFE98C9C1C3A> /usr/lib/libxar.1.dylib
0x7fff66e1e000 - 0x7fff66f00fff libxml2.2.dylib (33.11) <9300A969-3487-37F7-9429-761673DBF4A8> /usr/lib/libxml2.2.dylib
0x7fff66f04000 - 0x7fff66f2cfff libxslt.1.dylib (16.12) <42938E5F-5FE9-3265-8D10-1D1115BC5402> /usr/lib/libxslt.1.dylib
0x7fff66f2d000 - 0x7fff66f3fff3 libz.1.dylib (76.0.1) /usr/lib/libz.1.dylib
0x7fff677ee000 - 0x7fff677f3ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff677f4000 - 0x7fff677fffff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff67800000 - 0x7fff67807fff libcompiler_rt.dylib (101.2) <49B8F644-5705-3F16-BBE0-6FFF9B17C36E> /usr/lib/system/libcompiler_rt.dylib
0x7fff67808000 - 0x7fff67811ff7 libcopyfile.dylib (166.40.1) <3C481225-21E7-370A-A30E-0CCFDD64A92C> /usr/lib/system/libcopyfile.dylib
0x7fff67812000 - 0x7fff678a4fdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib
0x7fff679b1000 - 0x7fff679f1ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff679f2000 - 0x7fff67a28fff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib
0x7fff67a29000 - 0x7fff67a29ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff67a2a000 - 0x7fff67a36ff3 libkxld.dylib (6153.141.62) <9B5A7FB4-A8FB-3B33-889B-56788962B3C8> /usr/lib/system/libkxld.dylib
0x7fff67a37000 - 0x7fff67a37ff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib
0x7fff67a38000 - 0x7fff67a3dff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff67a3e000 - 0x7fff67a40ff3 libquarantine.dylib (110.40.6) <6CADF28C-2F20-3FA5-9FB9-49EAB0FD2489> /usr/lib/system/libquarantine.dylib
0x7fff67a41000 - 0x7fff67a42ff7 libremovefile.dylib (48) <7C7EFC79-BD24-33EF-B073-06AED234593E> /usr/lib/system/libremovefile.dylib
0x7fff67a43000 - 0x7fff67a5aff3 libsystem_asl.dylib (377.60.4) /usr/lib/system/libsystem_asl.dylib
0x7fff67a5b000 - 0x7fff67a5bff7 libsystem_blocks.dylib (74) <0D53847E-AF5F-3ACF-B51F-A15DEA4DEC58> /usr/lib/system/libsystem_blocks.dylib
0x7fff67a5c000 - 0x7fff67ae3fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib
0x7fff67ae4000 - 0x7fff67ae7ffb libsystem_configuration.dylib (1061.141.2) <393137B7-3631-3450-B6F4-95EECD3ADDFF> /usr/lib/system/libsystem_configuration.dylib
0x7fff67ae8000 - 0x7fff67aebfff libsystem_coreservices.dylib (114.1) <72857ADA-AA97-398B-B089-F50B2E89064B> /usr/lib/system/libsystem_coreservices.dylib
0x7fff67aec000 - 0x7fff67af4fff libsystem_darwin.dylib (1353.100.4) <19242BF1-BAF6-3DF0-AAD3-93E3E0870DBE> /usr/lib/system/libsystem_darwin.dylib
0x7fff67af5000 - 0x7fff67afcfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff67afd000 - 0x7fff67afeffb libsystem_featureflags.dylib (17) <29FD922A-EC2C-3F25-BCCC-B58D716E60EC> /usr/lib/system/libsystem_featureflags.dylib
0x7fff67aff000 - 0x7fff67b4cff7 libsystem_info.dylib (538.1) /usr/lib/system/libsystem_info.dylib
0x7fff67b4d000 - 0x7fff67b79ff7 libsystem_kernel.dylib (6153.141.62) <6DBAE428-C233-326C-89C5-8C258E0AE963> /usr/lib/system/libsystem_kernel.dylib
0x7fff67b7a000 - 0x7fff67bc5fef libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff67bc6000 - 0x7fff67bedfff libsystem_malloc.dylib (283.100.6) <8549294E-4C53-36EB-99F3-584A7393D8D5> /usr/lib/system/libsystem_malloc.dylib
0x7fff67bee000 - 0x7fff67bfbffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff67bfc000 - 0x7fff67c05ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff67c06000 - 0x7fff67c0efef libsystem_platform.dylib (220.100.1) <009A7C1F-313A-318E-B9F2-30F4C06FEA5C> /usr/lib/system/libsystem_platform.dylib
0x7fff67c0f000 - 0x7fff67c19fff libsystem_pthread.dylib (416.100.3) <62CB1A98-0B8F-31E7-A02B-A1139927F61D> /usr/lib/system/libsystem_pthread.dylib
0x7fff67c1a000 - 0x7fff67c1eff3 libsystem_sandbox.dylib (1217.141.9) <75C7915D-19C4-3F32-B320-394BA4B18655> /usr/lib/system/libsystem_sandbox.dylib
0x7fff67c1f000 - 0x7fff67c21fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff67c22000 - 0x7fff67c29ffb libsystem_symptoms.dylib (1238.120.2) <702D0910-5C34-3D43-9631-8BD215DE4FE1> /usr/lib/system/libsystem_symptoms.dylib
0x7fff67c2a000 - 0x7fff67c40ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff67c42000 - 0x7fff67c47ff7 libunwind.dylib (35.4) <42B7B509-BAFE-365B-893A-72414C92F5BF> /usr/lib/system/libunwind.dylib
0x7fff67c48000 - 0x7fff67c7dffe libxpc.dylib (1738.140.3) <8DA7D88F-AE2F-3BCF-8426-8D041E57A9AA> /usr/lib/system/libxpc.dylib

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 3
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 716
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=760.4M resident=0K(0%) swapped_out_or_unallocated=760.4M(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)

VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 336K 2
CG image 24K 3
CoreAnimation 68K 8
CoreGraphics 8K 1
CoreImage 8K 2
CoreUI image data 332K 6
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 2.1G 487
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 784K 3 reserved VM address space (unallocated)
STACK GUARD 32.1M 17
Stack 45.4M 19
VM_ALLOCATE 412K 23
__DATA 36.0M 289
__DATA_CONST 344K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 491.2M 10
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 269.2M 286
__UNICODE 564K 1
mapped file 66.6M 22
shared memory 632K 14
=========== ======= =======
TOTAL 3.0G 1215
TOTAL, minus reserved VM space 3.0G 1215

Model: iMac13,1, BootROM 429.0.0.0.0, 4 processors, Quad-Core Intel Core i5, 2,9 GHz, 8 GB, SMC 2.9f5
Graphics: kHW_NVidiaGeForceGT650MItem, NVIDIA GeForce GT 650M, spdisplays_pcie_device, 512 MB
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54333531533643465238432D50422020
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54333531533643465238432D50422020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xF4), Broadcom BCM43xx 1.0 (7.21.190.33 AirPortDriverBrcm4360-1601.1)
Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Serial ATA Device: APPLE HDD ST1000LM024, 1 TB
USB Device: USB 3.0 Bus
USB Device: RF Receiver
USB Device: USB Multimedia Keyboard
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: FaceTime HD Camera (Built-in)
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: Hub
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: iMac, Apple Inc., 23.4

(Tue, 07/19/2022 - 06:23  |  6 comments)


bkoep's picture
User offline. Last seen 19 hours 51 min ago. Offline
Joined: 11/15/2012
Groups: Foldit Staff

Good news! I've found the bug and have a fix in the works. This should be resolved with the next devprev release (unfortunately, the fix may not make it into current devprev update).

naniewoo's picture
User offline. Last seen 1 day 17 hours ago. Offline
Joined: 06/17/2022
Groups: Belgium Team

Whoopi indeed good news, no worries still a lot to learn as I'm still exploring everything, thank you. Question, do I have to click on something to know when the release has been done? or how does it works pretty please? thank you.

bkoep's picture
User offline. Last seen 19 hours 51 min ago. Offline
Joined: 11/15/2012
Groups: Foldit Staff

When we release software updates, we make a news post on the front page of the website (like this one).

The Foldit app will check for new updates automatically every time you launch the application. If we release an update while Foldit is already running, Foldit will not update until you close the app and relaunch it.

naniewoo's picture
User offline. Last seen 1 day 17 hours ago. Offline
Joined: 06/17/2022
Groups: Belgium Team

Thank you for the information and i will keep this in mind.

LociOiling's picture
User offline. Last seen 18 min 6 sec ago. Offline
Joined: 12/27/2012

Late to this thread, but on Windows, Asymmetry Symmetry Maker (45296) on puzzle 2174, it throws this error:

ERROR: [string "menu=dialog.CreateDialog("Symmetry Bander")..."]:9: bad argument #4 to 'AddBetweenSegments' (atom number out of bounds)

It doesn't even get to the mutate dialogs.

This error happens both with the starting pose and a finished solution.

LociOiling's picture
User offline. Last seen 18 min 6 sec ago. Offline
Joined: 12/27/2012

I looked at the code, and this recipe doesn't stand a chance. With the start position for puzzle 2174, it will add 19 bands from segment 1 to segment 51, then terminate at atom 20. (Segment 1 has 21 atoms, but segment 51 has only 19.)

This problem shouldn't cause Foldit to crash, but it is an error.

Even if it managed to skate past the atom count issue, the recipe requires a protein with at least 100 segments. Puzzle 2174 has only 60 segments. The recipe want segments 1 through 50 to segments 51 through 100, even if some of those segments don't exist.

See the long-winded explanation for more.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons