DEVPREV; crash with missing atoms, rotamer positions

Case number:954892-2010616
Topic:Developer Preview
Opened by:Bletchley Park
Status:Open
Type:Bug
Opened on:Wednesday, October 21, 2020 - 20:29
Last modified:Friday, October 23, 2020 - 02:16

20201016-a462ce81c2-win_x86-devprev

game.application.boinc.Boinc: Sending SOPs:
interactive.application.shared.Tool: Time: 830205 - Tool on_action_complete called
core.pack.rotamer_set.RotamerSet_: [ WARNING ] including current in order to get at least 1 rotamer !!!!!! 1 ALA:NtermProteinFull
core.pack.rotamer_set.RotamerSet_: [ WARNING ] including current in order to get at least 1 rotamer !!!!!! 2 ASP
core.pack.rotamer_set.RotamerSet_: [ WARNING ] including current in order to get at least 1 rotamer !!!!!! 3 SER
core.pack.rotamer_set.RotamerSet_: [ WARNING ] including current in order to get at least 1 rotamer !!!!!! 4 PHE
core.pack.rotamer_set.RotamerSet_: [ WARNING ] including current in order to get at least 1 rotamer !!!!!! 5 VAL
core.pack.rotamer_set.RotamerSet_: [ WARNING ] including current in order to get at least 1 rotamer !!!!!! 6 ILE
interactive.application.shared.Tool: Time: 830207 - Tool on_action_complete called
interactive.application.shared.Tool: Time: 830208 - Tool on_action_complete called
interactive.application.shared.Tool: Time: 830210 - Tool on_action_complete called
game.application.boinc.Boinc: Sending SOPs:
interactive.application.shared.Tool: Time: 830212 - Tool on_action_complete called
interactive.util.filter.DdgScoreFilter: -----------------------------------------
Scores Wghtd.Score
-----------------------------------------
fa_atr -61.963
fa_rep 14.447
fa_sol 29.917
fa_intra_rep -0.024
fa_intra_sol_xover4 0.438
lk_ball_wtd 1.632
fa_elec -22.267
hbond_sr_bb 0.000
hbond_lr_bb 0.000
hbond_bb_sc -3.321
hbond_sc -4.852
dslf_fa13 0.000
omega 0.000
fa_dun 5.303
p_aa_pp 0.000
yhh_planarity 0.019
ref 0.000
rama_prepro 0.000
cart_bonded 0.213
-----------------------------------------
Sum ddg: -40.4567
interactive.util.filter.DdgScoreFilter: -----------------------------------------
Scores Wghtd.Score
-----------------------------------------
fa_atr -61.713
fa_rep 6.896
fa_sol 28.591
fa_intra_rep -0.020
fa_intra_sol_xover4 0.454
lk_ball_wtd 0.354
fa_elec -22.397
hbond_sr_bb 0.000
hbond_lr_bb 0.000
hbond_bb_sc -3.321
hbond_sc -6.142
dslf_fa13 0.000
omega 0.000
fa_dun 5.823
p_aa_pp 0.000
yhh_planarity 0.019
ref 0.000
rama_prepro 0.000
cart_bonded 0.397
-----------------------------------------
Sum ddg: -51.0598
interactive.application.shared.Tool: Time: 830214 - Tool on_action_complete called
interactive.util.filter.DdgScoreFilter: -----------------------------------------
Scores Wghtd.Score
-----------------------------------------
fa_atr -62.410
fa_rep 13.918
fa_sol 28.792
fa_intra_rep -0.007
fa_intra_sol_xover4 0.074
lk_ball_wtd 1.482
fa_elec -21.392
hbond_sr_bb 0.000
hbond_lr_bb 0.000
hbond_bb_sc -3.321
hbond_sc -4.033
dslf_fa13 0.000
omega 0.000
fa_dun 6.328
p_aa_pp 0.000
yhh_planarity 0.026
ref 0.000
rama_prepro 0.000
cart_bonded 0.285
-----------------------------------------
Sum ddg: -40.2592
interactive.application.shared.Tool: Time: 830216 - Tool on_action_complete called
interactive.util.filter.DdgScoreFilter: -----------------------------------------
Scores Wghtd.Score
-----------------------------------------
fa_atr -62.161
fa_rep 6.367
fa_sol 27.466
fa_intra_rep -0.004
fa_intra_sol_xover4 0.090
lk_ball_wtd 0.204
fa_elec -21.521
hbond_sr_bb 0.000
hbond_lr_bb 0.000
hbond_bb_sc -3.321
hbond_sc -5.324
dslf_fa13 0.000
omega 0.000
fa_dun 6.848
p_aa_pp 0.000
yhh_planarity 0.026
ref 0.000
rama_prepro 0.000
cart_bonded 0.469
-----------------------------------------
Sum ddg: -50.8617
interactive.application.shared.Tool: Time: 830218 - Tool on_action_complete called
game.application.boinc.Boinc: Sending SOPs:
interactive.application.shared.Tool: Time: 830219 - Tool on_action_complete called
interactive.util.filter.DdgScoreFilter: -----------------------------------------
Scores Wghtd.Score
-----------------------------------------
fa_atr -62.410
fa_rep 13.918
fa_sol 28.792
fa_intra_rep -0.007
fa_intra_sol_xover4 0.074
lk_ball_wtd 1.482
fa_elec -21.392
hbond_sr_bb 0.000
hbond_lr_bb 0.000
hbond_bb_sc -3.321
hbond_sc -4.033
dslf_fa13 0.000
omega 0.000
fa_dun 6.328
p_aa_pp 0.000
yhh_planarity 0.026
ref 0.000
rama_prepro 0.000
cart_bonded 0.285
-----------------------------------------
Sum ddg: -40.2592
interactive.util.filter.DdgScoreFilter: -----------------------------------------
Scores Wghtd.Score
-----------------------------------------
fa_atr -62.161
fa_rep 6.367
fa_sol 27.466
fa_intra_rep -0.004
fa_intra_sol_xover4 0.090
lk_ball_wtd 0.204
fa_elec -21.521
hbond_sr_bb 0.000
hbond_lr_bb 0.000
hbond_bb_sc -3.321
hbond_sc -5.324
dslf_fa13 0.000
omega 0.000
fa_dun 6.848
p_aa_pp 0.000
yhh_planarity 0.026
ref 0.000
rama_prepro 0.000
cart_bonded 0.469
-----------------------------------------
Sum ddg: -50.8617
interactive.application.shared.Tool: Time: 830222 - Tool on_action_complete called
interactive.application.shared.Tool: Time: 830223 - Tool on_action_complete called
interactive.util.filter.DdgScoreFilter: -----------------------------------------
Scores Wghtd.Score
-----------------------------------------
fa_atr -62.362
fa_rep 14.238
fa_sol 28.916
fa_intra_rep -0.008
fa_intra_sol_xover4 0.082
lk_ball_wtd 1.586
fa_elec -21.613
hbond_sr_bb 0.000
hbond_lr_bb 0.000
hbond_bb_sc -3.321
hbond_sc -4.274
dslf_fa13 0.000
omega 0.000
fa_dun 6.231
p_aa_pp 0.000
yhh_planarity 0.019
ref 0.000
rama_prepro 0.000
cart_bonded 0.271
-----------------------------------------
Sum ddg: -40.235
interactive.application.shared.Tool: Time: 830225 - Tool on_action_complete called
game.application.boinc.Boinc: Sending SOPs:

UNHANDLED EXCEPTION
****** Encountered Crash at Unknown File:0
Unknown Exception
1: RaiseException +88 bytes (no line)
2: _CxxThrowException +101 bytes (no line)
3: std::_Xout_of_range +31 bytes (no line)
4: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer +400 bytes (no line)
5: core::pack::annealer::FixbbSimAnnealer::run +1151 bytes (no line)
6: core::pack::pack_rotamers_run +669 bytes (no line)
7: core::pack::pack_rotamers_run +334 bytes (no line)
8: core::pack::pack_rotamers +662 bytes (no line)
9: protocols::simple_moves::ddG::calculate +1085 bytes (no line)
10: interactive::application::appfilter::DDGScoreFilter::compute +193 bytes (no line)
11: interactive::application::appfilter::DDGScoreFilter::apply +84 bytes (no line)
12: interactive::rosetta_util::Filter::apply_filter +593 bytes (no line)
13: interactive::rosetta_util::ReferencePoseInfo::asynchronous_run_filter +111 bytes (no line)
14: boost::detail::function::void_function_obj_invoker0,boost::shared_ptr,unsigned int,boost::shared_ptr,unsigned long),boost::_bi::list5 >,boost::_bi::value >,boost::_bi::value,boost::_bi::value >,boost::_bi::value > >,void>::invoke +82 bytes (no line)
15: boost::function0::operator() +120 bytes (no line)
16: interactive::util::Thread::thread_entry_func +69 bytes (no line)
17: interactive::util::Thread::win32_thread_startup_helper +14 bytes (no line)
18: BaseThreadInitThunk +18 bytes (no line)
19: RtlInitializeExceptionChain +99 bytes (no line)
20: RtlInitializeExceptionChain +54 bytes (no line)

1: RaiseException +88 bytes (no line)
2: _CxxThrowException +101 bytes (no line)
3: std::_Xout_of_range +31 bytes (no line)
4: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer +400 bytes (no line)
5: core::pack::annealer::FixbbSimAnnealer::run +1151 bytes (no line)
6: core::pack::pack_rotamers_run +669 bytes (no line)
7: core::pack::pack_rotamers_run +334 bytes (no line)
8: core::pack::pack_rotamers +662 bytes (no line)
9: protocols::simple_moves::ddG::calculate +1085 bytes (no line)
10: interactive::application::appfilter::DDGScoreFilter::compute +193 bytes (no line)
11: interactive::application::appfilter::DDGScoreFilter::apply +84 bytes (no line)
12: interactive::rosetta_util::Filter::apply_filter +593 bytes (no line)
13: interactive::rosetta_util::ReferencePoseInfo::asynchronous_run_filter +111 bytes (no line)
14: boost::detail::function::void_function_obj_invoker0,boost::shared_ptr,unsigned int,boost::shared_ptr,unsigned long),boost::_bi::list5 >,boost::_bi::value >,boost::_bi::value,boost::_bi::value >,boost::_bi::value > >,void>::invoke +82 bytes (no line)
15: boost::function0::operator() +120 bytes (no line)
16: interactive::util::Thread::thread_entry_func +69 bytes (no line)
17: interactive::util::Thread::win32_thread_startup_helper +14 bytes (no line)
18: BaseThreadInitThunk +18 bytes (no line)
19: RtlInitializeExceptionChain +99 bytes (no line)
20: RtlInitializeExceptionChain +54 bytes (no line)

(Wed, 10/21/2020 - 20:29  |  2 comments)


Joined: 05/19/2009
Groups: Contenders
Topic: General » Developer Preview
Type: Suggestion » Bug

forgot to set these to devprev, bug

Joined: 09/29/2016
Groups: Gargleblasters

I'm not sure I follow what's going on here?

What puzzle was this?

What did you do to cause it?
--It looks like maybe you had 6 Segments selected and then used the Rotamer Tool ('Pick Sidechains' is the name in game) on them?

How have you determined Atoms were 'missing'?

Were you able to reproduce the crash?

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons