Log.txt spam: "core.kinematics.AtomTree [ERROR] and core.conformation.Conformation [WARNING]

Case number:671071-2009455
Topic:Game: Other
Opened by:Formula350
Status:Open
Type:Bug
Opened on:Monday, April 13, 2020 - 19:37
Last modified:Monday, April 13, 2020 - 19:42

I wasn't certain how to title this one, or classify it for the Topic (hence Game: Other).
The good news is: It's not a client crash this time!
The bad news is: It creates a lllllllllot of errors.
The annoying news is: All those errors over time cause for a huge log file...

If it's only camera related, not so bad, but if it happens when running tools then it could cause clients running recipes to have log files balloon into many hundreds of MB in size. Thankfully that log file compresses very well, so I'm only having to upload 90KB instead of 32MB! (Which is attached in a reply since Feedback form only allows images for... reasons? lol)

The majority are virtually the same errors with likely just the coordinates changing, but as I scrolled through the log, there was a second one that also showed up in one rare instance (that I noticed). Here's a snippet of the log where both are happening; however, this continued for some 5000+ lines, so I'm only including the beginning, middle, and end for sanity sake:
***** STARTING THREAD ActionBuild
RT: 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111000011111111111111111111111111111111111111111111
lo,hi,size: 107,109,4
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 12-1, 12-2, 12-3, 13-1!
core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.
core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 12 BB 2
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 12-2, 12-3, 13-1, 13-2!
core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.
core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 12 BB 3
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 12-3, 13-1, 13-2, 13-3!
core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.
core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 13 BB 1
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 23-1, 23-2, 23-3, 24-1!
core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.
[SNIP]
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 91-2, 91-3, 92-1, 92-2!
core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.
core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 91 BB 3
core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.
core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 92 BB 1
34 fragments found for fragment size 4
[SNIP]
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 76-1, 76-2, 76-3, 77-1!
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 76-2, 76-3, 77-1, 77-2!
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 76-3, 77-1, 77-2, 77-3!
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 91-1, 91-2, 91-3, 92-1!
core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 91-2, 91-3, 92-1, 92-2!
***** ENDING THREAD ActionBuild
Time: 3.34641e+06 - Tool on_action_complete called
Time: 3.34641e+06 - Tool on_action_complete called



NOTE: This log spans 3 days as that's when I initially launched Foldit. As such, I can't say for certain which puzzles these apply to without really diving into it. HOWever, I can say that the one at the bottom of the log IS on 1824. Since I was able to induced it, just in case it isn't inherent to 1824 on the whole, I've shared that design under the name "Josh - AtomTree Error". Given the error name, I suspect it may come down to, or be related to, having "Show Bondable Atoms" enabled in the view options.

Enjoy!
~~Guy-Who-Thinks-The-Bug-Reporting-Achievement-Should-Come-Out-Of-Retirement aka Formula350

(Mon, 04/13/2020 - 19:37  |  1 comment)


Joined: 09/29/2016
Groups: Gargleblasters

RENAME FILE AND REMOVE .txt EXTENSION!!
It's a RAR4 compressed file, but had to work-around the .txt-only upload issue since as I mentioned... 32MB. (and my rural LTE connection resembles 1999-era broadband with half-mbit speeds, so I won't be uploading it uncompressed lol)

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