Linux crash changing rotamer for cysteine
Case number: | 845829-2008612 |
Topic: | Crash/Hang |
Opened by: | pauldunn |
Status: | Open |
Type: | Bug |
Opened on: | Friday, January 17, 2020 - 19:32 |
Last modified: | Friday, January 17, 2020 - 19:32 |
Crash on Linux changing rotamer for cysteine using Pick Sidechains tool.
Crashes using scripts also.
Shared 'cysteine crash' with scientists (puzzle 1786).
Load 'cysteine crash'
select segment 13 (cysteine)
bring up Pick Sidechains tool
change rotamer position
crash
log.txt:
***** STARTING THREAD ActionRotamerPicker
RT: 111111111111111111111111111111111111111111111111111111111111111111111111
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS:CtermProteinFull:NtermProteinFull 1
ERROR: Atom_::dihedral_between_bonded_children: atoms not found!
ERROR:: Exit from: /home/jflat06/foldit/develop/source/src/core/kinematics/tree/Atom_.cc line: 429
lsb_release -a
Distributor ID: Ubuntu
Description: Ubuntu 19.10
Release: 19.10
Codename: eoan