Core Existence: Monomer (max +2800)
Ensures that at least 28 residues are buried in the core of the monomer unit.
Core: Complex (max +0)
Awards no bonuses or penalties. Click Show to see which residues count as "Core" for the H-bond Network objective.
Rewards networks that comprise at least two H-bonds involving core residues.
Between 1 and 9 H-bonds should cross the interface between symmetric units.
Networks must be at least 75% satisfied (i.e. 75% of all bondable atoms in a network must make a H-bond).
SS Design (max +500)
Penalizes all CYS residues. Penalizes GLY, ALA residues in sheets. Penalizes GLY, ALA in helices.
Ideal Loops (max +500)
Penalizes any loop region that does not match one of the Building Blocks in the Blueprint tool. Use "Auto Structures" to see which regions of your protein count as loops.
I believe this point has cropped up before, but it would be nice if there was some way of determining what polar bonds are unsatisfied in an H-bond network.
This is the most important aspect of H-bond networks! We're working on better detection of unsatisfied polar atoms already; we'll make sure that these atoms are clearly indicated, as well.