On Windows, I see debug.txt with the message "Cannot type atom with element 'Cu'".
See also feedback 2003188.
I''m also crashing.
Problem signature:
Problem Event Name: APPCRASH
Application Name: Foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 5795a631
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.23569
Fault Module Timestamp: 57f7bc1f
Exception Code: e06d7363
Exception Offset: 0000c54f
OS Version: 6.1.7601.2.1.0.768.3
Locale ID: 1033
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789
Debug.txt - looks like the same as above!
version: 1
{
"build_id" : "20161026-4422e3a127-win_x86"
"crash_id" : "c0cae7f5-fe61-4816-933e-f02aa351e4ec"
"current_actions" : ""
"current_tool" : ""
"file" : "core/chemical/atomtype_support.cc:277"
"machine_id" : "cc92676a-e14b-4fce-a9c8-c2c9716f244d"
"macro_id" : "-1"
"message" : "Cannot type atom with element 'Cu'"
"player_id" : "286843"
"puzzle_id" : "0"
"puzzle_running_time" : "1359"
"running_time" : "1359.16"
"timestamp" : "1481198902"
}
verify: 24d1f5bec3f8b6f29d43afb238e3ef3c
I've let the team know about the thread here and in feedback.
Puzzle 1315, segment 129 (?)
Once you pointed it out, it's still kind of hard to see. I had to switch to light background and turn off the density to see it.
We're still not certain of the reason for these crashes. However, your shared logs and crash reports will be very helpful in tracking down the problem. We appreciate your patience!
For some reason, the copper ion at segment 129 reports five atoms.
print ( "atoms = " .. structure.GetAtomCount ( 129 ) )
atoms = 5
Yes, at some point in Rosetta's history, it seems that all residues were assumed to have more than one atom. In special cases like this, where it's desirable to have a "residue" with a single atom, the quick-and-dirty solution was simply to tack on a few virtual atoms. The virtual atoms aren't modeled with any physical properties, but they play nicely with some other constructs in the Rosetta code base.
I guess the virtual atoms do have a position in space.
Try this code for on the starting pose for puzzle 1315:
local ac129 = structure.GetAtomCount ( 129 )
print ( "segment 129 atom count = " .. ac129 )
for ii = 1, ac129 do
band.AddBetweenSegments ( 7, 129, 5, ii )
end
Unfortunately, I can't seem to post an image at the moment. The band to atom 1 of segment 129 goes to the ball representing the copper atom. The remaining bands go to points in space near the copper atom. Unlike normal spacebands, they are "headless".
I'm really glad you've tried to include the metal atom; I really can't see how we can fold accurately if they are missing. It's too bad that it's crashing Rosetta and showing other anomalies. I hope they can be worked out.
Cannot reload the puzzle once I played it and close the client. It crashes...
log.txt:
Finished show_puzzle_screen...
has key .ocmdline
has key .odensity
has key .owts
has key .params
has key .opdb
has key .opuzzle_setup
has key .ofilters
core.scoring.electron_density.xray_scattering: [ WARNING ] Unknown atom CU
starting score : 20542.8
puzzle loaded
ERROR: Cannot type atom with element 'Cu'
ERROR:: Exit from: ..\..\..\source\src\core\chemical\atomtype_support.cc line: 277
UNHANDLED EXCEPTION
1: RaiseException +98 bytes (no line)
2: alIsAuxiliaryEffectSlot +611704 bytes (no line)
3: library_main +36595372 bytes (no line)
4: library_main +35457859 bytes (no line)
5: library_main +3582435 bytes (no line)
6: library_main +3127156 bytes (no line)
7: library_main +1521280 bytes (no line)
8: library_main +1518378 bytes (no line)
9: library_main +1584645 bytes (no line)
10: library_main +1729308 bytes (no line)
11: library_main +2301806 bytes (no line)
12: library_main +2354829 bytes (no line)
13: library_main +1738511 bytes (no line)
14: library_main +1733631 bytes (no line)
15: library_main +103682 bytes (no line)
16: library_main +210778 bytes (no line)
17: library_main +124959 bytes (no line)
18: library_main +317096 bytes (no line)
19: library_main +3236885 bytes (no line)
20: library_main +3237339 bytes (no line)
21: BaseThreadInitThunk +36 bytes (no line)
22: RtlSubscribeWnfStateChangeNotification +1081 bytes (no line)
23: RtlSubscribeWnfStateChangeNotification +1028 bytes (no line)