puzzle picture
1246: Unsolved De-novo Freestyle 81: Predicted Contacts
Status: Closed

Summary

Name: 1246: Unsolved De-novo Freestyle 81: Predicted Contacts
Status: Closed
Created: 06/13/2016
Points: 100
Expired: 06/20/2016 - 23:00
Difficulty: Intermediate
Description: This is a follow-up puzzle for Puzzle 1243, now with Predicted Contacts to help guide your folding! See the blog for information on using the contact map. You can see the predicted contacts for this protein by clicking the Contact Map button in the Main menu (Selection Interface) or in the Actions tab (Classic Interface). You will notice that different contacts are shown in different shades of green, with brighter green contacts indicating stronger predictions. Players will be able to load in manual saves from Puzzle 1243 and use them as a starting point here.

Sequence:
ISVRTVNSSSSMINPMATPATGAFNGTPASIKERVLPHTLPIDVDPFDSMASDTTRMVYGNTSSGGIIGSSALSAKAP
Categories: Overall, Predicted Contacts, Prediction

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Comments

jeff101's picture
User offline. Last seen 4 hours 55 sec ago. Offline
Joined: 04/20/2012
Groups: Go Science
Library of Contact Maps:

http://foldit.wikia.com/wiki/Distance_Maps and http://memorize.com/distance-and-contact-maps show Distance and Contact Maps along-side their respective 3D images for many different proteins. Images are classified as in the SCOPe database (http://scop.berkeley.edu), and http://memorize.com/distance-and-contact-maps can shuffle the images in multiple-choice and matching modes to help you learn the patterns in them.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons