Contact map puzzle?

Case number:699969-2000759
Topic:General
Opened by:Bruno Kestemont
Status:Closed
Type:Question
Opened on:Monday, May 25, 2015 - 17:36
Last modified:Wednesday, December 16, 2015 - 14:11

I wonder why there were so much contact map puzzles in CASP11 and almost no one in foldit afterwards.

I liked this kind of puzzle.

(Mon, 05/25/2015 - 17:36  |  7 comments)


Joined: 09/21/2011
Groups: Void Crushers

It would be good to have some to develop better scripts.

jeff101's picture
User offline. Last seen 10 hours 17 min ago. Offline
Joined: 04/20/2012
Groups: Go Science

Right now, we have about a year to get ready for the next CASP competition.

Susume's picture
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Joined: 10/02/2011

+1 Would love to have time to work on several of these before the next CASP season.

jeff101's picture
User offline. Last seen 10 hours 17 min ago. Offline
Joined: 04/20/2012
Groups: Go Science

Maybe one or more Contact Map Contests would be helpful.

jeff101's picture
User offline. Last seen 10 hours 17 min ago. Offline
Joined: 04/20/2012
Groups: Go Science

I think someone (jmbrownlee333?) said in Vet Chat yesterday that there were Contact Maps for known structures on the Baker Lab site. Please post links to these maps and structures if you can find them. Perhaps they would make good Contact Map puzzles or contests.

Joined: 07/21/2013
Groups: Beta Folders

If you type "Protein contact map baker lab", you get 6,930,000 hits. One is:

http://openseq.org/

PUBLICATIONS

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.
Sergey Ovchinnikov, Hetunandan Kamisetty, and David Baker.
Elife (2014). [LINK][PDF]
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence-and structure-rich era.
Hetunandan Kamisetty, Sergey Ovchinnikov, and David Baker.
Proceedings of the National Academy of Sciences 110, no. 39 (2013): 15674-15679. [LINK][PDF]
Learning generative models for protein fold families.
Sivaraman Balakrishnan, Hetunandan Kamisetty, Jaime G. Carbonell, Su-In Lee, and Christopher James Langmead.
Proteins: Structure, Function, and Bioinformatics 79, no. 4 (2011): 1061-1078. [LINK][PDF]

Joined: 09/24/2012
Groups: Go Science
Status: Open » Closed

Thanks for your responses and support.

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