HBond network client 20150512 crash

Case number:845829-2000724
Topic:Crash/Hang
Opened by:Bletchley Park
Status:Open
Type:DevPrev Issue
Opened on:Friday, May 15, 2015 - 10:44
Last modified:Friday, May 15, 2015 - 12:16

It crashed on puzzle 1087, just like that after several hours of 'normal' operation.

args passed:
'C:\Foldit\Foldit.exe'
core.init: Rosetta version b740d73796d78ccadecf61303aa408dd6e63685f from https://github.com/RosettaCommons/main.git
core.init: command: C:\Foldit\Foldit.exe -database cmp-database-bad622015a825afadea36cc3d4ce75ad/database -resources cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a/resources -interactive_game novice -boinc_url https://fold.it
core.init: 'RNG device' seed mode, using 'CryptGenRandom', seed=-1908196089 seed_offset=0 real_seed=-1908196089
core.init.random: RandomGenerator:init: Normal mode, seed=-1908196089 RG_type=mt19937
starting the init thread!..
boinc base url: https://fold.it
checking updates...
binary
local: 'f9af3fa14f08ed26101fae8592bd2aba'
remote: 'f9af3fa14f08ed26101fae8592bd2aba'
database
local: 'bad622015a825afadea36cc3d4ce75ad'
remote: 'bad622015a825afadea36cc3d4ce75ad'
resources
local: '9af4f47a4cde7b30c020da1c2482ae7a'
remote: '9af4f47a4cde7b30c020da1c2482ae7a'
cleaning up old components:
binary 00000000000000000000000000000000
binary f9af3fa14f08ed26101fae8592bd2aba
database bad622015a825afadea36cc3d4ce75ad
resources 00000000000000000000000000000000
resources 9af4f47a4cde7b30c020da1c2482ae7a
SoundTheme::load: cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a\resources\sounds/organic_01
loading: cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a\resources\sounds/organic_01/rotamer_land_00.ogg
loading: cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a\resources\sounds/organic_01/rotamer_land_01.ogg
loading: cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a\resources\sounds/organic_01/rotamer_land_02.ogg
loading: cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a\resources\sounds/organic_01/rotamer_land_03.ogg
loading: cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a\resources\sounds/organic_01/rotamer_land_04.ogg
loading: cmp-resources-9af4f47a4cde7b30c020da1c2482ae7a\resources\sounds/organic_01/rotamer_land_05.ogg
SVM classifier successfully loaded
Feature list successfully loaded
Valid classifier feature list
buildid: 20141110-b740d73796-win_x86-devprev
about to create view_options_button_
Duplicate hotkey Shift+L (Show outlines, )
setting side chain mode to: 0 Don't Show (Fast)
ViewOptionsWidget::refresh()
Playing: sounds/organic_01/splashscreen.ogg
Converting any old-style quicksaves and autosaves...
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 394 residue types
core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 413 residue types
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv
basic.io.database: Database file opened: scoring\score_functions\rama\Rama_smooth_dyn.dat_ss_6.4
Sending SOPs:

basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
building library...basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth
basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth
LoopHashLibrary: HASHSIZE: 3
LoopHashMap: Setting up hash_: Size: 3
LoopHashMap: Setting up hash_: Size: 10
LoopHashLibrary: HASHSIZE: 4
LoopHashMap: Setting up hash_: Size: 4
LoopHashMap: Setting up hash_: Size: 10
LoopHashLibrary: HASHSIZE: 5
LoopHashMap: Setting up hash_: Size: 5
LoopHashMap: Setting up hash_: Size: 10
LoopHashLibrary: HASHSIZE: 6
LoopHashMap: Setting up hash_: Size: 6
LoopHashMap: Setting up hash_: Size: 10
LoopHashLibrary: HASHSIZE: 7
LoopHashMap: Setting up hash_: Size: 7
LoopHashMap: Setting up hash_: Size: 10
LoopHashLibrary: HASHSIZE: 8
LoopHashMap: Setting up hash_: Size: 8
LoopHashMap: Setting up hash_: Size: 10
LoopHashLibrary: HASHSIZE: 9
LoopHashMap: Setting up hash_: Size: 9
LoopHashMap: Setting up hash_: Size: 10
LoopHashLibrary: Reading merged bbdb_ (BackboneDatabase) with extras
LoopHashLibrary: Reading cmp-database-bad622015a825afadea36cc3d4ce75ad\database\loop_hash\backbone.db.gz
BackboneDB: Reading in proteins 0 to 3598 out of 3598 , partition: 1/1
BackboneDB: Read in 3598 proteins
BackboneDB: Data_ size 3598
LoopHashLibrary: Reading loopdb (LoopHashDatabase) with loop size 3
LoopHashMap: Loophashmap range 0 3597
LoopHashLibrary: Reading loopdb (LoopHashDatabase) with loop size 4
LoopHashMap: Loophashmap range 0 3597
LoopHashLibrary: Reading loopdb (LoopHashDatabase) with loop size 5
LoopHashMap: Loophashmap range 0 3597
LoopHashLibrary: Reading loopdb (LoopHashDatabase) with loop size 6
LoopHashMap: Loophashmap range 0 3597
LoopHashLibrary: Reading loopdb (LoopHashDatabase) with loop size 7
Sending SOPs:

LoopHashMap: Loophashmap range 0 3597
LoopHashLibrary: Reading loopdb (LoopHashDatabase) with loop size 8
LoopHashMap: Loophashmap range 0 3597
LoopHashLibrary: Reading loopdb (LoopHashDatabase) with loop size 9
LoopHashMap: Loophashmap range 0 3597
LoopHashLibrary: Read MergedLoopHash Library from disk: 9 seconds
LoopHashLibrary: Hash: 3
LoopHashMap: loopdb_: 347623 Size: 5561968
LoopHashMap: BackboneIndexMap: 347623 Size: 4171476
LoopHashLibrary: Hash: 4
LoopHashMap: loopdb_: 374936 Size: 5998976
LoopHashMap: BackboneIndexMap: 374936 Size: 4499232
LoopHashLibrary: Hash: 5
LoopHashMap: loopdb_: 383770 Size: 6140320
LoopHashMap: BackboneIndexMap: 383770 Size: 4605240
LoopHashLibrary: Hash: 6
LoopHashMap: loopdb_: 387808 Size: 6204928
LoopHashMap: BackboneIndexMap: 387808 Size: 4653696
LoopHashLibrary: Hash: 7
LoopHashMap: loopdb_: 390566 Size: 6249056
LoopHashMap: BackboneIndexMap: 390566 Size: 4686792
LoopHashLibrary: Hash: 8
LoopHashMap: loopdb_: 390129 Size: 6242064
LoopHashMap: BackboneIndexMap: 390129 Size: 4681548
LoopHashLibrary: Hash: 9
LoopHashMap: loopdb_: 392351 Size: 6277616
LoopHashMap: BackboneIndexMap: 392351 Size: 4708212
LoopHashLibrary: BackboneDB: 273484
done.
About to show the puzzle screen...
Trying to get the puzzle list...
Loading cache...
Parsing puzzle URL...
core.fragment.picking_old.vall.vall_io: Reading Vall library from cmp-database-bad622015a825afadea36cc3d4ce75ad\database\sampling/vall.small.dat.2001-02-02 ...
Parsing contests...
core.fragment.picking_old.vall.vall_io: ... done. Read 50000 lines. Time elapsed: 1 seconds.
core.fragment.picking_old.vall.vall_io: Prior library contained 0 sections totaling 0 residues.
core.fragment.picking_old.vall.vall_io: Added 268 sections to library totaling 50000 residues.
Reading in vall_torsions file: cmp-database-bad622015a825afadea36cc3d4ce75ad\database\sampling/rna/1jj2.torsions
Parsing macros...
Saving the cache...
Lines read from vall_torsions file: 2754
Parsing level completion...
Sending SOPs:

Initting the list...
Got the puzzles...
Sending SOPs:

Finished show_puzzle_screen...
has key .ocmdline
has key .sym
has key .roscript
game.util.rosetta_scripts_util: filename=0001998912.ir_puzzle.roscript
game.util.rosetta_scripts_util: Parsed script:
03E7DFF8core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine
core.scoring.etable: Using alternate parameters: LJ_RADIUS_SOFT in Etable construction.
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_env_log.txt
basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_pair_log.txt
TASKOPERATIONS
SCOREFXNS
FILTERS
MOVERS
APPLY_TO_POSE
PROTOCOLS
protocols.toolbox.TaskOperations.DsspDesignOperation: Initializing DSSP regions with default residues
protocols.toolbox.TaskOperations.DsspDesignOperation: Assigning residues ACDEFGHIKLMNPQRSTVWY to all
protocols.toolbox.TaskOperations.DsspDesignOperation: Excluding residues AGP from Helix
protocols.toolbox.TaskOperations.DsspDesignOperation: Excluding residues AGP from Strand
protocols.jd2.parser.TaskOperationLoader: Defined TaskOperation named "exclude_gly" of type DsspDesign
protocols.RosettaScripts.util: Object no_name reading the following task_operations: Adding the following task operations
exclude_gly
has key .owts
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
core.scoring.CartesianBondedEnergy: Initializing IdealParametersDatabase with default Ks=300 , 80 , 20 , 10 , 40
basic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle_foldit/default-lengths.txt
core.scoring.CartesianBondedEnergy: Read 770 bb-independent lengths.
basic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle_foldit/default-angles.txt
core.scoring.CartesianBondedEnergy: Read 1464 bb-independent angles.
basic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle_foldit/default-torsions.txt
core.scoring.CartesianBondedEnergy: Read 2132 bb-independent torsions.
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
has key .opdb
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
has key .opuzzle_setup
has key .ofilters
core.indexed_structure_store.BinaryFragmentStoreBackend: Loading backend: cmp-database-bad622015a825afadea36cc3d4ce75ad\database\fragment_filter_db/
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1^(81)----*j1*----->80:Sub1B(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2^(162)----j2=1---->161:Sub2B(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3^(243)----j3=1---->242:Sub3B(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4^(324)----j4=1---->323:Sub4B(244-323)
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
core.scoring.CartesianBondedEnergy: Adding undefined angle VRT: X,ORIG,Y to DB with theta0 = 1.5708 , Ktheta = 80
core.scoring.CartesianBondedEnergy: Adding undefined length VRT: ORIG,X, to DB with d0 = 1 , Kd = 300
core.scoring.CartesianBondedEnergy: Adding undefined length VRT: ORIG,Y, to DB with d0 = 1 , Kd = 300
core.pack.dunbrack: Dunbrack 2010 library took 0.152 seconds to load from binary
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
starting score : 102346
puzzle loaded
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave.ir_solution loaded.
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-best.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-recentbest.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-creditbest.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-best.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-recentbest.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-creditbest.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-best.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-recentbest.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.SymmData: symmetry name: c4
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 2
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 81
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: -6.12323e-017 -1 0
core.conformation.symmetry.SymmData: y: -1 6.12323e-017 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: 1.83697e-016 1 0
core.conformation.symmetry.SymmData: y: 1 -1.83697e-016 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.pose.util: WARNING: conf2pdb_chain(): PDBInfo does not exist, returning default map 1=A, 2=B, ...
core.conformation.symmetry.util: =================== SYM FOLD TREE, jump notation: =symfixed= *indep* #symdof# jump[=follows] ========================
VRT0001(325)
|----#j5#---->Sub1B(81)----*j1*----->80:Sub1A(1-80)
\----=j9=---->VRT0002(326)
|----j6=5---->Sub2B(162)----j2=1---->161:Sub2A(82-161)
\----=j10=--->VRT0003(327)
|----j7=5---->Sub3B(243)----j3=1---->242:Sub3A(163-242)
\----=j11=--->VRT0004(328)----j8=5---->Sub4B(324)----j4=1---->323:Sub4A(244-323)
Autosave puzzles/0001998912/0000108474/default/autosave-creditbest.ir_solution loaded.
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
core.scoring.CartesianBondedEnergy: Creating new peptide-bonded energy container (81)
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.toolbox.SelectResiduesByLayer: pore_radius : 2
protocols.toolbox.SelectResiduesByLayer: core ( E, L, H ): 4 4 4
protocols.toolbox.SelectResiduesByLayer: surface (E, L, H ): 2 2 2
protocols.indexed_structure_store.filters.FragmentLookupFilter: Calculating Fragments Ideality: apply( pose=<328 residues> )
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 77 seconds: 0
protocols.toolbox.TaskOperations.DsspDesignOperation: Symmetry detected, extracting asymmetric unit.
protocols.toolbox.TaskOperations.DsspDesignOperation: Secondary structure: LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL_
GROUP CHAT CHANNEL: Contenders
clear density...
ViewOptionsWidget::refresh()
ScorePanel new session
BOINC says connect to: 128.95.1.227
Using nick: Bletchley_Park
Ended Initialization of NoviceGame
SRVR_THRD getting notifications...
Entering IRC::run
Sending SOPs:

exiting...
ViewOptionsWidget::refresh()
Option file found. Sending...
closing boinc...
Sending SOPs:

done.

(Fri, 05/15/2015 - 10:44  |  2 comments)


Joined: 05/19/2009
Groups: Contenders

pasting the log file did not work.
Attaching a png-ised zip of the log.

1087 crashed spontaneously on the devprev 20150512 client.

Joined: 05/19/2009
Groups: Contenders

If I recall correctly though, I had increased the undo size from 25 to 100 before that. might be related.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons