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1070: 75 Residue Symmetric Dimer Design
Status: Closed
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Summary
| Name: |
1070: 75 Residue Symmetric Dimer Design |
| Status: |
Closed |
| Created: |
04/02/2015 |
| Points: |
100 |
| Expired: |
04/09/2015 - 23:00 |
| Difficulty: |
Intermediate |
| Description: |
Design a protein dimer with C2 cyclic symmetry! This puzzle again uses separate "Core Existence" filters for the monomer unit and the symmetric complex. Click the "Show" checkbox beneath the Core Existence filter to see which residues have been identified as Core (orange), Boundary (green), or Surface (blue). There are several other filters in effect; see the puzzle comments for details. The Baker Lab will run folding predictions on your solutions for this puzzle, and those that perform well will be synthesized in the lab. Remember, you can use the Upload for Scientists button for up to 5 designs that you want us to look at, even if they are not the best-scoring solutions! |
| Categories: | Design, Overall, Symmetry |
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Comments
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Residue IE Score: Monitors that all PHE, TYR, and TRP residues are scoring well.
Core Existence: Monomer: Ensures that at least 21 residues are buried in the core of the monomer unit.
Core Existence: Complex: Ensures that at least 54 residues are buried in the core of the entire complex (including the interface between monomer units).
Fragment Score: Scans for parts of your design that are unlikely to fold up naturally. Use Rebuild and Remix tools to fix these regions of your design!
Secondary Structure: Checks that no more than 50% of residues are in helices; penalties are incurred if more than 50% of residues form helices.
Secondary Structure Design: Penalizes all CYS residues. Penalizes GLY, ALA, and PRO residues in helices and sheets.