Tue, 12/23/2014 - 16:40
#2
Scoring seems incorrect
The scoring between Dis/able Slow Filters seems somewhat off for this puzzle. For example, with a Disabled Score of 8378, the Enabled Score is 6788. But the loss in Points from Filters is only -1090. So, one of the two scores is showing incorrectly.
Sun, 01/04/2015 - 14:37
#3
Not all filters are considered to be slow
So probably some negative filters still count while a positive scoring filter does no longer count.
Mon, 01/05/2015 - 18:59
#4
*facepalm*
d'oh
Residue IE Score: Monitors that all PHE, TYR, and TRP residues are scoring well.
Core Existence: Ensures that at least 25% of the residues are buried in the core of your design.
Fragment Score: Scans for parts of your design that are unlikely to fold up naturally. Use Rebuild and Remix tools to fix these regions of your design!
Secondary Structure: Checks that no more than 50% of residues are in helices; penalties are incurred if more than 50% of residues form helices.
Secondary Structure Design: Penalizes all CYS residues. Penalizes GLY, ALA, and PRO residues in helices and sheets. Also penalizes hydrophilic residues in the core and hydrophobic residues on the surface.