Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
The above predictions are already on the starting model (based on the horizontal lines in the above figure).
Cutaway view hint:
If you hover your mouse over a segment and type shift-Q, the game will hide parts of the protein and cloud that are not in the same plane as that segment - it cuts down on how much cloud you see at one time and makes it easier to focus. Q returns to normal view.
This is the third repeat of an ED puzzle. I would really like to see one that hasnt been solved yet.
BTW, these kind of puzzles are now very good playable, congrats to the devs on the speed improvement since NC.
The difficulty is finding test cases appropriate for Foldit. Most unsolved cases involve low-resolution density maps for very large proteins.
We've been running these revisited puzzles to test new ED code and recalibrate density scoring, but we're also anxious for the next unsolved density map!