bkoep's picture
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Joined: 11/15/2012
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Residue IE Score: Monitors that all PHE, TYR, and TRP residues are scoring well.

Core Existence: Ensures that at least 35% of the residues are buried in the core of your design.

Fragment Score: Scans for parts of your design that are unlikely to fold up naturally. Use Rebuild and Remix tools to fix these regions of your design!

Secondary Structure: Checks that no more than 50% of residues are in helices; penalties are incurred if greater than 50% of residues form helices.

Secondary Structure Design: Penalizes GLY residues in helices and sheets.

Joined: 10/30/2012
Groups: Beta Folders
might be some issues with the

might be some issues with the core existence filter, check veteran chat

Joined: 10/30/2012
Groups: Beta Folders
imo, the gly filter is out of

imo, the gly filter is out of balance with the core existence filter

Joined: 10/30/2012
Groups: Beta Folders
ignore above

ignore above

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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