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Recipe: Contact Mapper v2.1
Created by KarenCH 80 2272
4.5
Your rating: None Average: 4.5 (30 votes)

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Name: Contact Mapper v2.1
ID: 49712
Created on: Sun, 07/27/2014 - 11:44
Updated on: Sun, 07/27/2014 - 11:44
Description:

Attempts to use Contact Map information while compressing proteins in initial stages.



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KarenCH's picture
User offline. Last seen 1 year 9 weeks ago. Offline
Joined: 07/14/2012
some bug fixes from 2.0 - an

some bug fixes from 2.0 - an attempt to regularize names before publishing had been incompletely done.

KarenCH's picture
User offline. Last seen 1 year 9 weeks ago. Offline
Joined: 07/14/2012
Notes for use: 1. It does

Notes for use:

1. It does better if the option of insisting on contact scores improving is turned off - the improvements that get rejected generally turn out to have found something worthwhile. I've taken to figuring that I'll get the contact points back later.

2. I usually have fusing turned off in early runs, and on in later ones.

3. Other than that, there doesn't seem to be much reason to change the default settings.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Microsoft, Adobe, RosettaCommons