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Recipe: FreezeSelectSome0
Created by jeff101 37 219
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Name: FreezeSelectSome0
ID: 101715
Created on: Sat, 12/26/2015 - 21:21
Updated on: Tue, 12/29/2015 - 03:37
Description:

FreezeSelectSome0d.txt 12/28/15 858pm code



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jeff101's picture
User offline. Last seen 18 hours 51 min ago. Offline
Joined: 04/20/2012
Groups: Go Science
What does FreezeSelectSome0 do?

FreezeSelectSome0 uses a menu with sliders and checkboxes to let you interactively pick ranges of segments to select, deselect, freeze, or unfreeze. For freezing and unfreezing, you can also choose backbones, sidechains, both, or neither.

As this recipe runs, it makes charts listing amino acids, secondary structure, and which segments are selected, deselected, frozen, or unfrozen. It even tells which segments have both backbones and sidechains frozen (fbs), which have frozen backbones but not sidechains (fb-), which have frozen sidechains but not backbones (f-s), and which have neither backbones nor sidechains frozen (f--). Many of these charts use 0's to indicate no or false, and 1's to indicate yes or true.

This recipe also lists which segments are cysteine (cys), glycine (gly), or proline (pro).

jeff101's picture
User offline. Last seen 18 hours 51 min ago. Offline
Joined: 04/20/2012
Groups: Go Science
Original vs Selection Interface

This recipe makes selection/deselection easier in the Original Interface and freezing/unfreezing easier in the Selection Interface.

Initial tests show that this recipe works better in the Original than in the Selection Interface. In the Selection Interface, this recipe doesn't always select/deselect residues as desired. If you can find ways to improve this recipe's behavior in the Selection Interface, please let me know.

Thanks!

Joined: 09/24/2012
Groups: Go Science
thanks

It's m particularity useful for selection in Original Interface (I don't know other ways to select segments in the Original Interface)

jeff101's picture
User offline. Last seen 18 hours 51 min ago. Offline
Joined: 04/20/2012
Groups: Go Science
Freezing in Selection Interface

Around 8:33 in https://www.youtube.com/watch?v=T56KiN0jiqc LociOiling shows how to freeze residues in the Selection Interface.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons