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Recipe: QuakeR v4
Created by GaryForbis 72 70
4.52778
Your rating: None Average: 4.5 (36 votes)

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Name: QuakeR v4
ID: 100444
Created on: Sun, 12/28/2014 - 07:32
Updated on: Sun, 12/28/2014 - 07:35
Description:

QuakeR v3.0 updated to scriptV2 with band to Beta Carbon when hydrophobic.



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Joined: 08/06/2010
Groups: Contenders
About version 4.0

I didn't add a dialogue box for the options. Let me know if you'd like me to do so.

This version:
converted to script v2
band hydrophobes to beta carbon
clean up on early exit

I also did a few small modifications to the logic.

Joined: 08/06/2010
Groups: Contenders
A warning

This script put me into a local minimum at AWP well below optimal. It was hard to get out of it.

I've not run QuakeR for 50 turns in ages so don't know if this is an artifact of banding to beta carbons.

Don't use this script excessively until end game.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons