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573: Advanced CASP10 Refinement Puzzle: TR663
Status: Closed

Summary

Name: 573: Advanced CASP10 Refinement Puzzle: TR663
Status: Closed
Created: 06/10/2012
Points: 0
Expired: 06/16/2012 - 23:59
Difficulty: Advanced
Description: This puzzle was closed and reposted as puzzle 573b (identical starting model but with the alignment tool, so you can use the Cut Tool) based on this suggestion: http://fold.it/portal/node/992917#comment-18188 You can manually save any solutions from this puzzle and load them in 573b.
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Comments

beta_helix's picture
User offline. Last seen 20 hours 35 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP10 Refinement target

Here is the CASP link for this Refinement target:
http://predictioncenter.org/casp10/target.cgi?id=103&view=refinement
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 32 & 115 are highly predicted to be in a sheet. However, the Leucine at residue 103 is predicted to be in a helix.

Joined: 08/30/2011
just to improve the handling

just to improve the handling of the protein you could make an alignment puzzle out of it, so that we can use the cut tool

beta_helix's picture
User offline. Last seen 20 hours 35 min ago. Offline
Joined: 05/09/2008
Groups: None
great suggestion, mottiger!
Joined: 06/17/2010
Please

make cut tool available on any puzzle :)

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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