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| Vote | # | Title | Status | Type | Submitter | Replies | Last updated |
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| 100-0 | Spacial Orientation Changes Made to Protein [Move Tool] Effects Voids/Burials/Exposures | Open | Bug | Formula350 | 03/17 14:29, Formula350 |
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| 300-0 | Spam and duplicate groups | Open | Bug | Heinermann | 12/17 20:34, Heinermann |
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| 500-0 | Specific Helix Rebuild Issues | Open | Bug | auntdeen | 02/03 10:10, AsDawnBr... |
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| 300-0 | Sphere View Bug | Open | Bug | bob1928 | 01/25 00:45, brow42 |
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| 300-0 | spontaneous cutpoints in 626 | Open | Bug | smilingone | 09/11 16:13, smilingone |
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| 100-0 | ss design filter | Open | Bug | Timo van... | 03/23 00:12, Timo van... |
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| 200-0 | SSL connect error | Open | Bug | wisky | 05/02 14:04, smilingone |
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| 200-0 | SSL connect error: Error contacting server | Open | Bug | gitwut | 04/28 20:12, spmm |
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| 300-0 | sss full of glycine, | Open | Bug | alcor29 | 03/09 16:40, alcor29 |
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| 700-0 | Standard Account crashes on start up Mac OS 10.8.3 | Open | Bug | Harrison47 | 04/06 07:31, Harrison47 |
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| 300-0 | Started puzzle in First Place! ??? | Open | Bug | shettler | 09/17 13:57, beta_helix |
| 300-0 | Stop button | Open | Bug | Anonymous | 11/19 01:24, Anonymous |
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| 100-0 | Strange things on 1114 (wiggle, filter) | Open | Bug | Timo van... | 07/23 15:11, inkycatz |
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| 800-0 | Strange Things with boxes | Open | Bug | Timo van... | 12/18 11:32, LociOiling |
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| 700-0 | Stretching a band attached to the ligand in 1855 caused a crash | Open | Bug | NinjaGreg | 06/26 13:12, agcohn821 |
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| 900-0 | structure.GetSymCount and new band.AddBetweenSegments missing | Open | Bug | LociOiling | 11/23 06:39, Bruno Ke... |
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| 500-0 | structure.RemixSelected retuns more than asked | Open | Bug | Timo van... | 05/06 17:07, jflat06 |
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| 100-0 | structure.SetAminoAcid sometimes does not return the highest | Open | Bug | Timo van... | 04/01 15:11, Timo van... |
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| 400-0 | Sulfonamides are broken in drug puzzles | Open | Bug | JellyJump | 05/13 20:55, LociOiling |
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| 300-0 | sum of segment subscores + 8000 not equal to score for protein | Open | Bug | brgreening | 08/09 08:53, brgreening |
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