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| Vote | # | Title | Status | Type | Submitter | Replies | Last updated |
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| 500-210 | Shaky Shake | Open | Bug | xiando | 06/14 15:44, Rav3n_pl |
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| 300-0 | Shake and Wiggle failure on 1206 after update - No crash! | Open | Bug | Graham MF | 03/18 01:10, Graham MF |
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| 700-0 | Setting secondary structure of invalid segment crashes client. | Open | Bug | LociOiling | 01/11 13:06, LociOiling |
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| 100-0 | Setting band strength is limited again | Open | Bug | Timo van... | 07/03 11:10, LociOiling |
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| 500-0 | SetAminoAcid (all) doesn't work | Open | Bug | ferrieux | 02/16 12:45, ferrieux |
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| 100-0 | Server is not picking up latest score improvements | Open | Bug | Timo van... | 08/28 09:14, katfish |
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| 200-0 | Server Glitches | Open | Bug | auntdeen | 01/17 12:07, beta_helix |
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| 300-0 | Serious issues rebuilding helices | Open | Bug | auntdeen | 10/30 21:14, auntdeen |
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| 300-0 | Serine in beta sheets | Open | Bug | mbinfield | 07/19 18:09, BootsMcGraw |
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| 500-0 | Selection Interface: Rebuild button disappears | Open | Bug | Madde | 08/20 17:28, Rav3n_pl |
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| 800-0 | selecting a segment in Rama map with tool running hides tools, clock | Open | Bug | LociOiling | 07/31 14:10, LociOiling |
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| 700-0 | Selecting "Load As Guide" crashes client in Puzzle 1035 | Open | Bug | phi16 | 01/13 09:50, NickyCGS |
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| 100-0 | Segment score is no longer equal to the sum of subscores | Open | Bug | Timo van... | 04/29 20:40, Timo van... |
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| 200-0 | Secondary structure diagrams missing: 606, 608 | Open | Bug | Susume | 08/08 20:15, Susume |
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| 500-0 | Scripting: get_score() after do_sidechain_snap() frequently returns previous score | Open | Bug | wld333 | 05/31 07:37, wld333 |
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| 300-0 | Script Stops when you right click a band in selection interface. | Open | Bug | phallicies | 01/31 07:51, phallicies |
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| 500-0 | Script hanging at Load Secondary Structure | Open | Bug | Schleicher | 06/12 17:55, Schleicher |
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| 500-0 | script edit changes lost | Open | Bug | janderso... | 11/09 11:38, bertro |
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| 800-0 | Script edit boxes now appearing too low now. | Open | Bug | alcor29 | 06/25 14:15, alcor29 |
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| 700-0 | Script Crashes application | Open | Bug | Fuad Agaev | 05/15 14:22, Todd6485577 |
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