the latest additions to the contact map are great. Maybe there is room for even more improvement:
I would like to be able to "filter" the contacts. For instance "show me all contacts with a weight over 1.0" and "all contacts with a weight smaller than 1.5" sort of sliders might make it easier to visualize contacts of interest.
Another thing I just ran into:
The contacts are shown in the protein as red lines and if one hovers with the mouse over it the massage "Threshold contacts between residues." is displayed. Is it possible to include the contact weight here or in the contact map window under "weight"?
LociOiling just made a nice recipe for this: Contact Cement.